PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00703.1.g00280.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HSF
Protein Properties Length: 514aa    MW: 57291.7 Da    PI: 10.0337
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00703.1.g00280.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind102.73.1e-322133032101
                                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEE CS
                  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFk 82 
                                   Fl+k+++++ d++++ ++sw + gnsf+v+d++ fa  +Lp++Fkh+nf+SFvRQLn+YgF+k+++++         weF+
  Zmw_sc00703.1.g00280.1.am.mk 213 FLTKTFDLVADPATDGVVSWGRAGNSFIVWDPHVFAAVLLPRFFKHNNFSSFVRQLNTYGFRKIDTDR---------WEFA 284
                                   9****************************************************************999.........**** PP

                                   ESXXXXXXXXXXXXXXXXX CS
                  HSF_DNA-bind  83 hksFkkgkkellekikrkk 101
                                   +k F +g+++ll+ ikr++
  Zmw_sc00703.1.g00280.1.am.mk 285 NKGFLRGQRHLLRMIKRRR 303
                                   *****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004155.1E-56209302IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.103.5E-36209302IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467858.71E-34209302IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000564.6E-18213236IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.0E-29213302IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.6E-18251263IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340252276IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.6E-18264276IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 514 aa     Download sequence    Send to blast
MRQAMPASHA LADTAIGLHH GSSRRDAGAA FSPALRFTGP ARKASRGRDR DQKNMARAVA  60
VVVLLSAVDS EIGRGREGSP TCAGRAPISA TPPASRTFRA RLATNAPRGL EPSIPLLTSL  120
VLSAVIKRST RYLAPPTATL PEEQRSFFPA RDAPNWLSAL TNRLVGRDTM DPEMPGLATV  180
KEEWPPEEEE EVEDAVGAPR PMEGLHKVGP PPFLTKTFDL VADPATDGVV SWGRAGNSFI  240
VWDPHVFAAV LLPRFFKHNN FSSFVRQLNT YGFRKIDTDR WEFANKGFLR GQRHLLRMIK  300
RRRPPSYLAA SHQQQQQALG SYLEVGHFGL DEEIDRLQRD KNTLLAEVVK LRQEQQSTKA  360
DVQAMEERLQ HAETKQVQMM GFLARALQNP DFFQQLLAQH QDSKRKELED AFSKKRRRPI  420
DVVPFAASSC QTTTNRSEEQ GAREFEELSE PGSSELENRA LNIHGLGKRK QDVQPQAASD  480
RNNQELLSEG MRGEGELPVP ETERRSRPPG STVK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A4e-2521130218120Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1403417KRKELEDAFSKKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18064488}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792158.11e-158uncharacterized protein LOC112873415
SwissprotQ8H7Y61e-153HFA2D_ORYSJ; Heat stress transcription factor A-2d
TrEMBLA0A1E5WLF61e-166A0A1E5WLF6_9POAL; Heat stress transcription factor A-2d
STRINGOMERI03G04380.11e-149(Oryza meridionalis)
STRINGSi038907m1e-151(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231