PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00699.1.g00090.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 411aa    MW: 43906.5 Da    PI: 8.7665
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00699.1.g00090.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY35.22.5e-11236256222
                                     --SS-EEEEEEE--TT-SS-E CS
                            WRKY   2 dDgynWrKYGqKevkgsefpr 22 
                                     dDgynWrKYGqK+vkgs++pr
  Zmw_sc00699.1.g00090.1.sm.mkhc 236 DDGYNWRKYGQKVVKGSDCPR 256
                                     8*******************9 PP
2WRKY108.43.5e-34306364159
                                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                     ldDgy+WrKYGqK+vkg+++prsYY+Ct+agC+v+k++er+++dpk+v++tYeg+Hnhe
  Zmw_sc00699.1.g00090.1.sm.mkhc 306 LDDGYRWRKYGQKVVKGNPHPRSYYKCTFAGCNVRKHIERASSDPKAVITTYEGKHNHE 364
                                     59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.0E-9232256IPR003657WRKY domain
SuperFamilySSF1182905.36E-8234256IPR003657WRKY domain
SMARTSM007741.3E-4235268IPR003657WRKY domain
PROSITE profilePS5081111.038236299IPR003657WRKY domain
PfamPF031066.0E-7236256IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.2E-37292366IPR003657WRKY domain
SuperFamilySSF1182902.09E-29298366IPR003657WRKY domain
PROSITE profilePS5081137.413301366IPR003657WRKY domain
SMARTSM007747.0E-40306365IPR003657WRKY domain
PfamPF031063.1E-26307364IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MSARPPPPPR PRLALPPRSN SESLFTGAGD ASPGPLTLAS ALFPPDADAG GGGSGASSST  60
GAGTPSFTQL LIGSLAPPPP AGAPQQQQQQ REAERGRGGV ARAGPVLSVA PPAPSASAAS  120
VFTVPPGLSP SGLLDSPGLL FSPAMGGFGM SHQQALAQVT AQASHSPLRM FDNMEQPSFS  180
TAARSSEAQQ HMNSAANMAG TSEMRMVTTN NDNASFQSVE ASQRYQLNAP VDKPADDGYN  240
WRKYGQKVVK GSDCPRRDDM DDSESRPQEV DDGDSENKRR NIQISSQRTL SEAKIIVQTT  300
SEVDLLDDGY RWRKYGQKVV KGNPHPRSYY KCTFAGCNVR KHIERASSDP KAVITTYEGK  360
HNHEPPVGRG SNQNAGMSQQ KGQNNQASIS RTDFSNANQR PMEFLQFKRE E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-35297366877Probable WRKY transcription factor 4
2lex_A2e-35297366877Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001147897.21e-113uncharacterized protein LOC100281507
TrEMBLA0A446SU560.0A0A446SU56_TRITD; Uncharacterized protein
STRINGGRMZM2G076657_P011e-113(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134538122