PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00697.1.g00010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | ERF | ||||||||
Protein Properties | Length: 178aa MW: 19047.6 Da PI: 10.5131 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54 | 4.2e-17 | 37 | 86 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + GVr+++ +gr++AeIrd + ng +r+slg+f++ae Aa a+++a+++ +g Zmw_sc00697.1.g00010.1.am.mk 37 FIGVRRRP-WGRFAAEIRDSTRNG--ARVSLGTFDSAEAAAMAYDQAALSARG 86 57******.**********44465..***********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 20.376 | 36 | 94 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.8E-28 | 36 | 100 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.9E-12 | 37 | 86 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.48E-20 | 37 | 96 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 7.5E-26 | 37 | 95 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.3E-10 | 37 | 48 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.99E-14 | 37 | 95 | No hit | No description |
PRINTS | PR00367 | 4.3E-10 | 76 | 96 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence Send to blast |
LSFSTTCSGD EAPAATSAPA PGAVARRERA SPCKEAFIGV RRRPWGRFAA EIRDSTRNGA 60 RVSLGTFDSA EAAAMAYDQA ALSARGPAAV LNFPVERVRE SLRGLSLSSV ALGGGSPVLQ 120 LKARHSKRKR RKKSEIAAAN GSAIGRNKSV MSELRRFVVE LEDLGADYLE ELLWISEC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-23 | 37 | 96 | 15 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 126 | 131 | KRKRRK |
2 | 126 | 132 | KRKRRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020192651.1 | 2e-48 | uncharacterized protein LOC109778496 | ||||
Swissprot | A0A3Q7I5Y9 | 7e-39 | ERFC3_SOLLC; Ethylene-response factor C3 | ||||
TrEMBL | T1NGN2 | 6e-48 | T1NGN2_TRIUA; Uncharacterized protein | ||||
STRING | Pavir.Ba02374.1.p | 4e-49 | (Panicum virgatum) | ||||
STRING | TRIUR3_29784-P1 | 9e-49 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP277 | 37 | 249 |
Publications ? help Back to Top | |||
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