![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zmw_sc00689.1.g00090.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 229aa MW: 24151.9 Da PI: 9.0074 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.2 | 6.3e-05 | 123 | 145 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++Cgk F ++ + H++ H Zmw_sc00689.1.g00090.1.am.mk 123 FICSYCGKKFCSPQAFGGHQNAH 145 89**************9999988 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 6.81E-5 | 122 | 150 | No hit | No description |
PROSITE profile | PS50157 | 10.471 | 123 | 150 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 125 | 145 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 229 aa Download sequence Send to blast |
MTEKAAGRPS RVVSLAEITS GSSSYKPPAW PAWLPASRDD MQIQSAGSNA RLSNHCTTWT 60 TTPADKPGKP GGSAGAALGA AEKLYPAGRR ASMDPDGAGR DLDLNLSLQP SSPAPEPEPP 120 GYFICSYCGK KFCSPQAFGG HQNAHKLERC LTKRARELAA ARARQDGQER DGAADEQASR 180 SRRGKEPVAI AASSTGSAAS LPSHQIRVPP EATSRRDSIA EDMDLSLKL |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020396330.1 | 5e-36 | zinc finger protein 4 | ||||
TrEMBL | A0A1D6I4T6 | 1e-34 | A0A1D6I4T6_MAIZE; Uncharacterized protein | ||||
STRING | GRMZM2G108818_P01 | 3e-35 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP183 | 36 | 274 |