PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zmw_sc00683.1.g00170.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | Trihelix | ||||||||
Protein Properties | Length: 814aa MW: 90283 Da PI: 11.356 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 69.4 | 6.7e-22 | 560 | 649 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtses 75 +Wt++e+laLiea+r+++e+lr+g+l++++W++v++++ + ++ +qC++k+e+l+kry+++++++++r+++ Zmw_sc00683.1.g00170.1.am.mk 560 CWTHEETLALIEAYRDRWESLRKGNLRAADWDDVAEAVtnrcgrFPTATPKTGVQCRHKIEKLRKRYRAERARSSGRSKG- 639 8*************************************999988888899*************************98443. PP trihelix 76 sstcpyfdqle 86 ++p++ l+ Zmw_sc00683.1.g00170.1.am.mk 640 -PKWPFYPLLH 649 .47****9886 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 7.0E-22 | 559 | 650 | No hit | No description |
PROSITE profile | PS50090 | 6.098 | 561 | 623 | IPR017877 | Myb-like domain |
SMART | SM00595 | 4.6E-6 | 568 | 656 | IPR006578 | MADF domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 814 aa Download sequence Send to blast |
MPAQEAKPKQ VKRQGEGRRS RRNRCLPSSG SLYGGGFPAP SGADSTPAMG CSIIRIPQSA 60 SEIEVWSIRL RWRPWRRDAG LLSLVAGGEV THDAAEQKLA ETGEVRKTSS SRVRRVNAID 120 FSPFFNLLYL CYDAPSKKEP KRIAFSFPVD HRSPQLLLLT MRLPRLSIAA QRSLPPQREP 180 IWTCHHHEAL LDVLAPPNPS SEKLSKSLID KLHIITEQHL EGFLLWPLAL GPLVVSPPHK 240 DAHGKVRSVR GGDRRARRRA GGAAWCTGYK YGFFCVGTWD DFSSVFFVCV GSWGFGLSFC 300 VFLPYGLSSW LWRTSVATAA ARQARGGIIK RVIRSAWQAA ETDGEKARRG GRHHPPTATR 360 HGTRPPRHDS PHDAEARPHP HPSHPPHAAI TRQTPKHDRR TAPPAPRTRR CPVPLPLPSR 420 SFHRAAHTRG PPPHRLPPPP YYDRFPSASS VPHLLHDHQT LDAFAAAADR PCLPRPQTRP 480 GTTPSPRPTS RRWACRARRR PPQPRRPRRG EGCCRRRAGR TRRXXXXGLP GAAAAAAAAA 540 ASSGGGMLGG GSGRRLPPPC WTHEETLALI EAYRDRWESL RKGNLRAADW DDVAEAVTNR 600 CGRFPTATPK TGVQCRHKIE KLRKRYRAER ARSSGRSKGP KWPFYPLLHD LAGNGAPDPS 660 PNAIIKIKTK SPVPPASSPS PVSSPSSEEE AVRSRSLHGL ISNGGAESGL RFTIPKASRT 720 RPVATRVEKT RNEDDAESEA MSEVVAALRA VGEGFVRMEE RRLELSLQLE KERMESEMKR 780 TQAMLDAQQL FLEAFLGKQQ PPYKRARISP TMED |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5689 | 32 | 50 |