PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00683.1.g00170.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Trihelix

Protein Properties

Length: 814aa MW: 90283 Da PI: 11.356

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00683.1.g00170.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	69.4	6.7e-22	560	649	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtses 75 +Wt++e+laLiea+r+++e+lr+g+l++++W++v++++ + ++ +qC++k+e+l+kry+++++++++r+++ Zmw_sc00683.1.g00170.1.am.mk 560 CWTHEETLALIEAYRDRWESLRKGNLRAADWDDVAEAVtnrcgrFPTATPKTGVQCRHKIEKLRKRYRAERARSSGRSKG- 639 8***********************************999988888899*********************98443. PP trihelix 76 sstcpyfdqle 86 ++p++ l+ Zmw_sc00683.1.g00170.1.am.mk 640 -PKWPFYPLLH 649 .47**9886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	7.0E-22	559	650	No hit	No description
PROSITE profile	PS50090	6.098	561	623	IPR017877	Myb-like domain
SMART	SM00595	4.6E-6	568	656	IPR006578	MADF domain

Sequence ? help Back to Top
Protein Sequence Length: 814 aa Download sequence Send to blast
MPAQEAKPKQ VKRQGEGRRS RRNRCLPSSG SLYGGGFPAP SGADSTPAMG CSIIRIPQSA 60 SEIEVWSIRL RWRPWRRDAG LLSLVAGGEV THDAAEQKLA ETGEVRKTSS SRVRRVNAID 120 FSPFFNLLYL CYDAPSKKEP KRIAFSFPVD HRSPQLLLLT MRLPRLSIAA QRSLPPQREP 180 IWTCHHHEAL LDVLAPPNPS SEKLSKSLID KLHIITEQHL EGFLLWPLAL GPLVVSPPHK 240 DAHGKVRSVR GGDRRARRRA GGAAWCTGYK YGFFCVGTWD DFSSVFFVCV GSWGFGLSFC 300 VFLPYGLSSW LWRTSVATAA ARQARGGIIK RVIRSAWQAA ETDGEKARRG GRHHPPTATR 360 HGTRPPRHDS PHDAEARPHP HPSHPPHAAI TRQTPKHDRR TAPPAPRTRR CPVPLPLPSR 420 SFHRAAHTRG PPPHRLPPPP YYDRFPSASS VPHLLHDHQT LDAFAAAADR PCLPRPQTRP 480 GTTPSPRPTS RRWACRARRR PPQPRRPRRG EGCCRRRAGR TRRXXXXGLP GAAAAAAAAA 540 ASSGGGMLGG GSGRRLPPPC WTHEETLALI EAYRDRWESL RKGNLRAADW DDVAEAVTNR 600 CGRFPTATPK TGVQCRHKIE KLRKRYRAER ARSSGRSKGP KWPFYPLLHD LAGNGAPDPS 660 PNAIIKIKTK SPVPPASSPS PVSSPSSEEE AVRSRSLHGL ISNGGAESGL RFTIPKASRT 720 RPVATRVEKT RNEDDAESEA MSEVVAALRA VGEGFVRMEE RRLELSLQLE KERMESEMKR 780 TQAMLDAQQL FLEAFLGKQQ PPYKRARISP TMED

Sequence ? help Back to Top

Protein Sequence Length: 814 aa Download sequence Send to blast

MPAQEAKPKQ VKRQGEGRRS RRNRCLPSSG SLYGGGFPAP SGADSTPAMG CSIIRIPQSA  60
SEIEVWSIRL RWRPWRRDAG LLSLVAGGEV THDAAEQKLA ETGEVRKTSS SRVRRVNAID  120
FSPFFNLLYL CYDAPSKKEP KRIAFSFPVD HRSPQLLLLT MRLPRLSIAA QRSLPPQREP  180
IWTCHHHEAL LDVLAPPNPS SEKLSKSLID KLHIITEQHL EGFLLWPLAL GPLVVSPPHK  240
DAHGKVRSVR GGDRRARRRA GGAAWCTGYK YGFFCVGTWD DFSSVFFVCV GSWGFGLSFC  300
VFLPYGLSSW LWRTSVATAA ARQARGGIIK RVIRSAWQAA ETDGEKARRG GRHHPPTATR  360
HGTRPPRHDS PHDAEARPHP HPSHPPHAAI TRQTPKHDRR TAPPAPRTRR CPVPLPLPSR  420
SFHRAAHTRG PPPHRLPPPP YYDRFPSASS VPHLLHDHQT LDAFAAAADR PCLPRPQTRP  480
GTTPSPRPTS RRWACRARRR PPQPRRPRRG EGCCRRRAGR TRRXXXXGLP GAAAAAAAAA  540
ASSGGGMLGG GSGRRLPPPC WTHEETLALI EAYRDRWESL RKGNLRAADW DDVAEAVTNR  600
CGRFPTATPK TGVQCRHKIE KLRKRYRAER ARSSGRSKGP KWPFYPLLHD LAGNGAPDPS  660
PNAIIKIKTK SPVPPASSPS PVSSPSSEEE AVRSRSLHGL ISNGGAESGL RFTIPKASRT  720
RPVATRVEKT RNEDDAESEA MSEVVAALRA VGEGFVRMEE RRLELSLQLE KERMESEMKR  780
TQAMLDAQQL FLEAFLGKQQ PPYKRARISP TMED

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5689	32	50