PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00661.1.g00020.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 686aa    MW: 72287.7 Da    PI: 8.8338
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00661.1.g00020.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2171.7e-05230252123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   ++C+ C+k F r  nL+ H r H
  Zmw_sc00661.1.g00020.1.am.mk 230 FVCEVCNKGFQREQNLQLHRRGH 252
                                   89*******************88 PP
2zf-C2H212.80.00035306328123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   +kC +C+k++  +s+ k H +t+
  Zmw_sc00661.1.g00020.1.am.mk 306 WKCDKCNKRYAVQSDWKAHSKTC 328
                                   58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.609.7E-6229252IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.88E-7229252No hitNo description
PROSITE profilePS5015711.094230252IPR007087Zinc finger, C2H2
SMARTSM003550.0041230252IPR015880Zinc finger, C2H2-like
PfamPF121714.6E-5230252IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS000280232252IPR007087Zinc finger, C2H2
SMARTSM00355300271301IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.2E-5294327IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.88E-7301326No hitNo description
SMARTSM00355110306326IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 686 aa     Download sequence    Send to blast
MRLLVRLLRF HPTGYYIIWG CCSWLFELLL AGVFSDLLGA APAGSRVCLL LAPSACFYLI  60
SSSSSSSSTF LVRAWVNRID LAEDAGSEAD RRTVRTMSSP LRDSDCSGKG RSYGGQASAS  120
GRVFVCFLGM AAASSAAFFG LGDTQMEPQA AASSLQQQQN SAAAPGAAAG GAQPKKKRNQ  180
PGNPRKSSLY LARLISDQSL AVFDDDDADA DPDAEVIALS PRTLLATNRF VCEVCNKGFQ  240
REQNLQLHRR GHNLPWKLKQ KNPKEARRKV YLCPEPTCVH HDPSRALGDL TGIKKHYCRK  300
HGEKKWKCDK CNKRYAVQSD WKAHSKTCGT REYRCDCGTL FSRSTPFSFL HANFLDRRDS  360
FITHRAFCDA LARESAQLPH LGAGLYVGTG SMALGVSGAA PQMSAVFGNQ SQSSSAAAAA  420
QLDHMITSPS SSSMFRAQAS ASSSSFFLGG GGGGPSPADQ DFSEDGDHSQ GSQSSLLHGK  480
TAAAFHGLMQ LPEQNQQGSN ANSNLLNLGF FSNNSGGAAG GQDARLVLQD QFNGGGGGNR  540
SAEQRSMMAS VGSHLSGNFS SLYNSSGSAS TGLPQNSATA LLLKAAQMGS STSSNNNSTS  600
ALLRAAGFGA NAQQGNRAAA EGSAAHETPF HDLIMNSLAR GSGGFSGGTA GLDDDKLSTR  660
DFLGVGRGSM APLGLHIGAL DPAQMK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-29302381368Zinc finger protein JACKDAW
5b3h_F4e-29302381368Zinc finger protein JACKDAW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004957598.10.0protein indeterminate-domain 5, chloroplastic
RefseqXP_004957599.10.0protein indeterminate-domain 5, chloroplastic
RefseqXP_004957600.10.0protein indeterminate-domain 5, chloroplastic
TrEMBLK3ZSG00.0K3ZSG0_SETIT; Uncharacterized protein
STRINGSi029540m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320