PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00659.1.g00350.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family SBP
Protein Properties Length: 406aa    MW: 43707.2 Da    PI: 9.4473
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00659.1.g00350.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP36.71.1e-115079130
                                  --SSTT-----TT--HHHHHTT--HHHHT- CS
                           SBP  1 lCqvegCeadlseakeyhrrhkvCevhska 30
                                  +Cq+egC+adls+ak+yhrrhkvC++   +
  Zmw_sc00659.1.g00350.1.am.mk 50 RCQAEGCKADLSSAKHYHRRHKVCSHTKSS 79
                                  6***********************865443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.5E-124580IPR004333Transcription factor, SBP-box
PROSITE profilePS511418.9554873IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.96E-104977IPR004333Transcription factor, SBP-box
PfamPF031103.5E-65180IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MSPPPAHDEG YLVVVCASEL RNLDPLGLNL GYRTYLPSRG GYMYGHHPPR CQAEGCKADL  60
SSAKHYHRRH KVCSHTKSSE ESQPSAKPSQ RLVRTLPMCG ARRSMQGSGK FVPLSHTSSS  120
FTGSCDHFPH PKTNLLETEK TEDRVRGGEV SQLGSDSDSG WGAYGLVGDD VAADGETHAG  180
AVPERGACHA RRYAASAAQD AGPRRAQPTS HLSLSLLSVR LRRSSAAAET QGSLLGSIRA  240
SSEGLNTLPT SDADVSTSIH IANDFAPSKH TYDSSQPQRH GPRLRSRTST LLLRPPTRAP  300
SPIRVSIPIR VPLCFGPCAS DLVRVTALSP RVIQRPSIIT RPVLGPCALP RARVRPPSDP  360
SSLSRHATIV DTYTAVVMSF DSSLKRFGLS GCYGDQCWRE SSSLCT
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7076222