PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00657.1.g00020.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 357aa MW: 38473.2 Da PI: 9.479

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00657.1.g00020.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.1	3.1e-05	221	243	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C + F++ L H+++H Zmw_sc00657.1.g00020.1.am.mk 221 YTCGYCRREFPSAQALGGHMNVH 243 9********************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.43E-5	219	248	No hit	No description
PROSITE profile	PS50157	10.824	221	248	IPR007087	Zinc finger, C2H2
Pfam	PF13912	6.9E-6	221	244	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	223	243	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence Send to blast
MLVLGTTRQK PVVPWAVHGS YSHHVRLAGS ARRGTTGRRS VARDGLKHNW ACLETSPAVF 60 CLFRQWRWTD GVNTKQINPL APNKFMVLSL SLSLSLNTVR VKPSTMPLRS SIYYRLLWQA 120 QGCLVAQKRP CPPCTNMSLS LPRNEERCSD GISAVASMAC HLCPDSGVGR MADAAQALHS 180 MERDHGRGLK QQPATAAWTP SNICLNPCFS WPVPPPSSSS YTCGYCRREF PSAQALGGHM 240 NVHRRDRARL RQCCSAFAPS PNLIAAHHYR WAAAAPRPPL PNLNLLPPHC TNAATAEPVV 300 YSFFSATVSA AAAPAATKAA VGVSLDLGIA GGVCNRGGGA AEEGGLDLEL RLGCSWE

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence Send to blast

MLVLGTTRQK PVVPWAVHGS YSHHVRLAGS ARRGTTGRRS VARDGLKHNW ACLETSPAVF  60
CLFRQWRWTD GVNTKQINPL APNKFMVLSL SLSLSLNTVR VKPSTMPLRS SIYYRLLWQA  120
QGCLVAQKRP CPPCTNMSLS LPRNEERCSD GISAVASMAC HLCPDSGVGR MADAAQALHS  180
MERDHGRGLK QQPATAAWTP SNICLNPCFS WPVPPPSSSS YTCGYCRREF PSAQALGGHM  240
NVHRRDRARL RQCCSAFAPS PNLIAAHHYR WAAAAPRPPL PNLNLLPPHC TNAATAEPVV  300
YSFFSATVSA AAAPAATKAA VGVSLDLGIA GGVCNRGGGA AEEGGLDLEL RLGCSWE

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4667	30	65