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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00650.1.g00230.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | C3H | ||||||||
Protein Properties | Length: 210aa MW: 22409.3 Da PI: 6.8669 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 34.2 | 4.1e-11 | 67 | 93 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C +++rtG C++G +CkF+H+p Zmw_sc00650.1.g00230.1.sm.mkhc 67 PGEPDCTYYLRTGLCRFGMTCKFNHPP 93 5789*********************97 PP | |||||||
2 | zf-CCCH | 43.1 | 7e-14 | 145 | 170 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++elC+f++r+G+Ck+G++CkF H++ Zmw_sc00650.1.g00230.1.sm.mkhc 145 GEELCKFYSRYGICKFGANCKFDHPM 170 78**********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.455 | 66 | 94 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.9E-5 | 66 | 93 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.1E-8 | 68 | 93 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.2E-5 | 71 | 94 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.5E-4 | 72 | 92 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.544 | 143 | 171 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.5E-7 | 143 | 170 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.2E-6 | 144 | 170 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.6E-11 | 145 | 170 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.4E-6 | 147 | 168 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MEDAGRESAP AAVTVSAVPA PPQPSTTKAA ADTSSPDPSA LYEEGMWQQM AMDSGATMQP 60 GPYPEWPGEP DCTYYLRTGL CRFGMTCKFN HPPDRNLAIA SARMKGEYPE RVGHPECQTG 120 TCKFGPTVSC SHLGPNKLMD LLNKGEELCK FYSRYGICKF GANCKFDHPM AAPIGVYAYG 180 FNASVSASAS TNVAVVRRLL GSPSGSGYTS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004971057.1 | 8e-79 | zinc finger CCCH domain-containing protein 12 | ||||
Swissprot | Q5JLB5 | 5e-62 | C3H12_ORYSJ; Zinc finger CCCH domain-containing protein 12 | ||||
TrEMBL | K3XI36 | 2e-77 | K3XI36_SETIT; Uncharacterized protein | ||||
STRING | Si001558m | 3e-78 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP17256 | 6 | 11 |
Publications ? help Back to Top | |||
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