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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00641.1.g00200.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB_related | ||||||||
Protein Properties | Length: 444aa MW: 47562.2 Da PI: 9.2413 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.7 | 4.2e-16 | 60 | 104 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT++E+ ++++a +++G W++I +++g ++t+ q++s+ qk+ Zmw_sc00641.1.g00200.1.sm.mkhc 60 REKWTEDEHRRFLEALQLHGRA-WRRIQEHIG-TKTAVQIRSHAQKF 104 789*****************88.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.07E-15 | 54 | 107 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.732 | 55 | 109 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 3.3E-16 | 58 | 107 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 1.7E-12 | 59 | 107 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.3E-14 | 60 | 103 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.8E-9 | 60 | 100 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.26E-10 | 62 | 105 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 444 aa Download sequence Send to blast |
MTCLERKTMA TDENAVGDRA AGENAVDHGN NHPGPGGMDL SGDDDHVPKT RKPYTITKQR 60 EKWTEDEHRR FLEALQLHGR AWRRIQEHIG TKTAVQIRSH AQKFFTKVVT VVRESSGSNG 120 GSGAGAPSIQ IPPPRPKRKP AHPYPRKVDG AAKKHAPTLK RLEKPPVRRM QSLREQDDGS 180 PTSVLTAAQT VLRADALDGA FSNTWSGGDR SRAPSVVGSD EHGNGGGSSA FCDAKDCAGS 240 EASVFKLFGK KVAVKDSYQH LQNGRNLKID VSPACVTKPT GNAIPCAGAN SWNHLWPGNM 300 PQVMYFLPGP GSFPAQSVMP WLGYNGSMPC SLFYPQAVTS NQEHHIPSES PDPEGSLTGS 360 NTASSVAPAS AAQNSDAVES RAEQGKASES VTKPAVKRLL KCPSSASTNR RGFMPYKRCA 420 AESDAPRSVA PGEEADGELT RLCL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025814514.1 | 1e-174 | protein REVEILLE 1-like | ||||
TrEMBL | A0A1E5VGC7 | 1e-173 | A0A1E5VGC7_9POAL; Protein LHY (Fragment) | ||||
STRING | Si017289m | 1e-159 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2722 | 36 | 86 |