PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00641.1.g00120.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | B3 | ||||||||
Protein Properties | Length: 471aa MW: 51145.2 Da PI: 9.5962 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 96.2 | 2.1e-30 | 162 | 263 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT-- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk 75 f+kv tpsdv+k++rlv+pk++ae++ ++++ l++ed+ g++W+++++y+++s++yv+tkGW++Fvk+++L Zmw_sc00641.1.g00120.1.am.mk 162 FDKVVTPSDVGKLNRLVIPKQYAEKYfpldaaA--NNKGLLLSFEDSAGKQWRFRYSYWNSSQSYVMTKGWSRFVKEKRLL 240 89***************************9643..457789**************************************** PP TT-EEEEEE-.SS.SEE..EEEE CS B3 76 egDfvvFkld.gr.sefelvvkv 96 +gD+v F++ + ++ +l++ + Zmw_sc00641.1.g00120.1.am.mk 241 AGDTVSFSRGaAEdERHRLFIDW 263 ********653333555566655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 5.1E-41 | 153 | 266 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.57E-29 | 159 | 268 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.47E-26 | 160 | 249 | No hit | No description |
SMART | SM01019 | 2.7E-21 | 162 | 267 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.1E-27 | 162 | 265 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.706 | 162 | 265 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 471 aa Download sequence Send to blast |
LRHSSASLLW QPALGGLLLP AAGGINHPTA SSRFCSGEGI SCKKYTPTRE EAASFWEYKT 60 TIRMDQFPTS GRFSKEEEAD EEQKDASNSM REIPFMTACS VATAESSSAA AASASSQSLA 120 SASASSSAPF RSASGDGGGA SGSGAGEEEG KANQAVEKEH MFDKVVTPSD VGKLNRLVIP 180 KQYAEKYFPL DAAANNKGLL LSFEDSAGKQ WRFRYSYWNS SQSYVMTKGW SRFVKEKRLL 240 AGDTVSFSRG AAEDERHRLF IDWKRRIDSR DPFRFPRFAL PMPLASHYSP HHYRPWGFGG 300 GGSGFFVPPS PPATLYEHRL RQGLDFRGMN YHPAPAVGRQ LFYFGAARMP QHAPILPRAP 360 SPLHYTVQPT SGPPVVLDSV PVIESPTTAA KRVRLFGVNL DNQDSAVGGG GEPSNLQGNA 420 LSLQMPGWQQ RAPTLRLLEF PRRGAESSAA SSPSLSSSSK REKSSALDLD L |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 6e-55 | 157 | 266 | 3 | 113 | B3 domain-containing transcription factor NGA1 |
5os9_B | 6e-55 | 157 | 266 | 3 | 113 | B3 domain-containing transcription factor NGA1 |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025794708.1 | 1e-171 | B3 domain-containing protein Os02g0683500-like | ||||
Swissprot | Q6EU30 | 1e-144 | Y2835_ORYSJ; B3 domain-containing protein Os02g0683500 | ||||
TrEMBL | A0A2S3GSD9 | 1e-170 | A0A2S3GSD9_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Aa00929.1.p | 1e-166 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP583 | 37 | 168 |
Publications ? help Back to Top | |||
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