PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00634.1.g00080.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 307aa MW: 33055.6 Da PI: 4.7836

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00634.1.g00080.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.8	2.3e-09	235	275	10	55
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+RR+ri +++ L+ l+P+ +K++ +++Le+Av+Y+k Lq Zmw_sc00634.1.g00080.1.sm.mk 235 RKRRERITERLKILQNLVPNG-----TKVDISTMLEEAVHYVKFLQ 275 9****************97.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	6.54E-13	225	287	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.291	225	274	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.5E-11	230	285	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.4E-10	231	280	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.10E-11	234	279	No hit	No description
Pfam	PF00010	9.9E-7	235	275	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence Send to blast
MEIAEVGWTT EFDFSVHGEE ESEEMMAQLL GNSFPSSHGE GGHQELPWCY QAPGAYCDGN 60 SGSLVVGPAA YEGCYLSNSN AALGISSSDD LGGLVQDHGA ADFLNVFPNH SFSVYENGNG 120 SLNQVDLDDP GMSGVDSACA ANKRKHLVAD ELDHQTRARK RVRKCEAAKG PKKAGQSGDE 180 NADATLITSG SPMSCCTSDD SIDSNASRDC ADARPRTKAR AGRGAATEPQ SIYARKRRER 240 ITERLKILQN LVPNGTKVDI STMLEEAVHY VKFLQLQIKL LSSDDTWMFA PIAYNGMNVG 300 ADLNIAR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	142	163	KRKHLVADELDHQTRARKRVRK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025806266.1	1e-121	transcription factor bHLH139-like isoform X1
Refseq	XP_025806267.1	1e-121	transcription factor bHLH139-like isoform X1
TrEMBL	K3Z8E3	1e-121	K3Z8E3_SETIT; Uncharacterized protein
STRING	Pavir.Ca02532.1.p	1e-121	(Panicum virgatum)
STRING	Si022813m	1e-122	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4310	32	70