PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00631.1.g00130.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 1051aa MW: 113725 Da PI: 9.3972

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00631.1.g00130.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.1	7.4e-06	29	51	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ F+r nL+ H r H Zmw_sc00631.1.g00130.1.am.mk 29 FVCEVCNRGFPREQNLQLHRRGH 51 89*******************88 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	2.1E-4	28	51	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	7.68E-7	28	51	No hit	No description
PROSITE profile	PS50157	10.741	29	51	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0029	29	51	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	31	51	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	7.68E-7	100	125	No hit	No description
SMART	SM00355	230	105	125	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1051 aa Download sequence Send to blast
MHLINDDDAD PDAEVIALSP GTLLATNRFV CEVCNRGFPR EQNLQLHRRG HNLPWRLKQK 60 NPKEARRKVY LCPEPTCVHH DPSRALGDLT GIKKHFCRKH GEKKWKCDKC NKLYGVQSDW 120 KAHSKTCGTR EYRCDCGKLF SRYPCLDSPF SIDPANFLAI ITIIFFLFFT ASESTLGIPT 180 GSREDIALPA SARPHASFLK DSFITHRAFC DALARESAQI TPLGTGLYVG SGGRALGVSG 240 GAPQMSAVFG TQAQPSAAAA AQLDHIMASF SSPSMFGSQA SACSSSFFLG GGGGPPPSQL 300 DFSEDGDYSQ GSQSSHLLHS KTPAGFHGLM QLPEQNQQGS KANGNLLNLG FFSNNSGGAA 360 AGQDARLVIQ DQFNGNTEQR SMTASVGNHL SGNFSSLYNS PGSASASDLP QNSATALLLK 420 AAQMGSTTSS NPNCTSVLLR AAGFGGNAQQ GNSAAGEGSA ADETHFHDLI MNSLASGSGG 480 TGLDDGKLST RDFLGVGRGS MAPIGVHMGA LDPAQMNLFE THAVDDNRRA RHVRYRVPGK 540 QSYTGTRRTP PSQLLLIAWA RPYQCGEALA LACFFLDTPP GRRRLSLCMR HLTPAASARC 600 FVGSPGTRKR VRLLVLPLSL ENHLVAWRRH VANWRLAVPG TCVEKHRAAG VNKISTMRSV 660 RPLQAEGGIV LASAVGRVHT RAYRSIDRGW HMRDGFGLSL SLARCPWRLA PGGISWYHHA 720 WPVADSNQRG QARLEAGAME CYVLGVRAAG KKDAEAMVTG HKETAREFPR WRTTASAPCP 780 APGTCASRVW TDGMVSWSVH RPRVVTTQHL AKSQSHSTLS CRARPPTSGD RRRRPDVPSR 840 RPSGEEERAV VRCHDASPHR HRRLRREATT TGTAITNPAW GEDWDGRDER NEEQQVDVDA 900 DRKDGSWGET GRAHGTQTCR QAEGKATTTC PSDPGRRHAR AADIEVAASK RFTGPFHAPP 960 WTSGTVVLVD EHYPWTEISP ACQVPAMWLA TVVLVGREEE RWLVPTHGHA CDLHAASLPR 1020 QAGLRPQHHA LHQPRGELAG GGARSACLGR A

Sequence ? help Back to Top

Protein Sequence Length: 1051 aa Download sequence Send to blast

MHLINDDDAD PDAEVIALSP GTLLATNRFV CEVCNRGFPR EQNLQLHRRG HNLPWRLKQK  60
NPKEARRKVY LCPEPTCVHH DPSRALGDLT GIKKHFCRKH GEKKWKCDKC NKLYGVQSDW  120
KAHSKTCGTR EYRCDCGKLF SRYPCLDSPF SIDPANFLAI ITIIFFLFFT ASESTLGIPT  180
GSREDIALPA SARPHASFLK DSFITHRAFC DALARESAQI TPLGTGLYVG SGGRALGVSG  240
GAPQMSAVFG TQAQPSAAAA AQLDHIMASF SSPSMFGSQA SACSSSFFLG GGGGPPPSQL  300
DFSEDGDYSQ GSQSSHLLHS KTPAGFHGLM QLPEQNQQGS KANGNLLNLG FFSNNSGGAA  360
AGQDARLVIQ DQFNGNTEQR SMTASVGNHL SGNFSSLYNS PGSASASDLP QNSATALLLK  420
AAQMGSTTSS NPNCTSVLLR AAGFGGNAQQ GNSAAGEGSA ADETHFHDLI MNSLASGSGG  480
TGLDDGKLST RDFLGVGRGS MAPIGVHMGA LDPAQMNLFE THAVDDNRRA RHVRYRVPGK  540
QSYTGTRRTP PSQLLLIAWA RPYQCGEALA LACFFLDTPP GRRRLSLCMR HLTPAASARC  600
FVGSPGTRKR VRLLVLPLSL ENHLVAWRRH VANWRLAVPG TCVEKHRAAG VNKISTMRSV  660
RPLQAEGGIV LASAVGRVHT RAYRSIDRGW HMRDGFGLSL SLARCPWRLA PGGISWYHHA  720
WPVADSNQRG QARLEAGAME CYVLGVRAAG KKDAEAMVTG HKETAREFPR WRTTASAPCP  780
APGTCASRVW TDGMVSWSVH RPRVVTTQHL AKSQSHSTLS CRARPPTSGD RRRRPDVPSR  840
RPSGEEERAV VRCHDASPHR HRRLRREATT TGTAITNPAW GEDWDGRDER NEEQQVDVDA  900
DRKDGSWGET GRAHGTQTCR QAEGKATTTC PSDPGRRHAR AADIEVAASK RFTGPFHAPP  960
WTSGTVVLVD EHYPWTEISP ACQVPAMWLA TVVLVGREEE RWLVPTHGHA CDLHAASLPR  1020
QAGLRPQHHA LHQPRGELAG GGARSACLGR A

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	3e-19	101	142	3	44	Zinc finger protein JACKDAW
5b3h_F	3e-19	101	142	3	44	Zinc finger protein JACKDAW

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP24679	4	6