PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00624.1.g00280.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family B3
Protein Properties Length: 701aa    MW: 76863.7 Da    PI: 9.1251
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00624.1.g00280.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B330.85.1e-10271330158
                                     EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE CS
                              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr 58 
                                     f+k l+ sd+++ grlvlpkk+ae++   ++++e+  l+++d +g++W ++++++ + ++
  Zmw_sc00624.1.g00280.1.sm.mkhc 271 FEKMLSASDAGRIGRLVLPKKCAEAYfpPISQPEGLPLKVQDVTGKEWMFQFRFWPNNNS 330
                                     89**************************555566778***************99766554 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-18263331IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-13268330IPR015300DNA-binding pseudobarrel domain
CDDcd100179.95E-15269332No hitNo description
SMARTSM010190.0036271348IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 701 aa     Download sequence    Send to blast
MAPPSPVWSP SMHVPQNVAD RKENPVKSWR PPAGQISSQW RQTSMWSVSS VQSDLQQRLA  60
YEFDRPSGSE KLLPGRTFIH GSERKFDEMH DRPTTPASMN QLLRDRDANG HGQPTNLDPA  120
YYALYHREGP HPSSVNDLGH HGGENESFSA RRVGISDAST GLDAGFKLDS HHPSDQPSLS  180
VGLPSSFAST NGPKEHIRIA SSQPQASSSL QKQFYAHPVS GYNEFQAQMR NGRPRMDAKA  240
RSQLLPRYWP RITDQELQHL SGDSHSVTPL FEKMLSASDA GRIGRLVLPK KCAEAYFPPI  300
SQPEGLPLKV QDVTGKEWMF QFRFWPNNNS RIRLEPEGKL IMGFRKATNL STEQDQTSKP  360
TNGAPTSSEV NGKAPAPDSS PNAAATRQNK VKIESNSSSP VEQATASKID KGGSAQKEGQ  420
GTVQSSQVSV KRKATSVGQK IKRLRMDNEE STELKITWEE AQELLRPPPK APSVVVVDGH  480
EFEEYEEPPI LGRKTHFATN QSGETHQWAQ CFGGAKKSKA KIEADTIDAS DGLDTLANLA  540
ILGEGEALPS QPTTKHPRHR PGCSCIVCIQ PPSGKGPKHK QTCTCNVCMT VRRRFRTLML  600
RREKRKDTGS PRKKEASQTS ETVLQTGSGP PAISTSTDSS PQKADTNADG PEDMAVDPKM  660
TSSPVKNHID LNSQPDRDDE QSPKADAGAA GATRLLRDNL T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5yzy_C2e-412503491125B3 domain-containing transcription repressor VAL1
5yzz_C2e-412503491125B3 domain-containing transcription repressor VAL1
5z00_C2e-412503491125B3 domain-containing transcription repressor VAL1
5z00_G2e-412503491125B3 domain-containing transcription repressor VAL1
5z00_K2e-412503491125B3 domain-containing transcription repressor VAL1
5z00_M2e-412503491125B3 domain-containing transcription repressor VAL1
6j9a_A2e-412503492126B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1601613REKRKDTGSPRKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002460861.20.0B3 domain-containing protein Os07g0563300 isoform X2
SwissprotQ0D5G40.0Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLA0A1B6QF040.0A0A1B6QF04_SORBI; Uncharacterized protein
STRINGSb02g036430.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74903647