PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00624.1.g00280.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | B3 | ||||||||
Protein Properties | Length: 701aa MW: 76863.7 Da PI: 9.1251 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 30.8 | 5.1e-10 | 271 | 330 | 1 | 58 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr 58 f+k l+ sd+++ grlvlpkk+ae++ ++++e+ l+++d +g++W ++++++ + ++ Zmw_sc00624.1.g00280.1.sm.mkhc 271 FEKMLSASDAGRIGRLVLPKKCAEAYfpPISQPEGLPLKVQDVTGKEWMFQFRFWPNNNS 330 89**************************555566778***************99766554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.3E-18 | 263 | 331 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.92E-13 | 268 | 330 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.95E-15 | 269 | 332 | No hit | No description |
SMART | SM01019 | 0.0036 | 271 | 348 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 701 aa Download sequence Send to blast |
MAPPSPVWSP SMHVPQNVAD RKENPVKSWR PPAGQISSQW RQTSMWSVSS VQSDLQQRLA 60 YEFDRPSGSE KLLPGRTFIH GSERKFDEMH DRPTTPASMN QLLRDRDANG HGQPTNLDPA 120 YYALYHREGP HPSSVNDLGH HGGENESFSA RRVGISDAST GLDAGFKLDS HHPSDQPSLS 180 VGLPSSFAST NGPKEHIRIA SSQPQASSSL QKQFYAHPVS GYNEFQAQMR NGRPRMDAKA 240 RSQLLPRYWP RITDQELQHL SGDSHSVTPL FEKMLSASDA GRIGRLVLPK KCAEAYFPPI 300 SQPEGLPLKV QDVTGKEWMF QFRFWPNNNS RIRLEPEGKL IMGFRKATNL STEQDQTSKP 360 TNGAPTSSEV NGKAPAPDSS PNAAATRQNK VKIESNSSSP VEQATASKID KGGSAQKEGQ 420 GTVQSSQVSV KRKATSVGQK IKRLRMDNEE STELKITWEE AQELLRPPPK APSVVVVDGH 480 EFEEYEEPPI LGRKTHFATN QSGETHQWAQ CFGGAKKSKA KIEADTIDAS DGLDTLANLA 540 ILGEGEALPS QPTTKHPRHR PGCSCIVCIQ PPSGKGPKHK QTCTCNVCMT VRRRFRTLML 600 RREKRKDTGS PRKKEASQTS ETVLQTGSGP PAISTSTDSS PQKADTNADG PEDMAVDPKM 660 TSSPVKNHID LNSQPDRDDE QSPKADAGAA GATRLLRDNL T |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5yzy_C | 2e-41 | 250 | 349 | 1 | 125 | B3 domain-containing transcription repressor VAL1 |
5yzz_C | 2e-41 | 250 | 349 | 1 | 125 | B3 domain-containing transcription repressor VAL1 |
5z00_C | 2e-41 | 250 | 349 | 1 | 125 | B3 domain-containing transcription repressor VAL1 |
5z00_G | 2e-41 | 250 | 349 | 1 | 125 | B3 domain-containing transcription repressor VAL1 |
5z00_K | 2e-41 | 250 | 349 | 1 | 125 | B3 domain-containing transcription repressor VAL1 |
5z00_M | 2e-41 | 250 | 349 | 1 | 125 | B3 domain-containing transcription repressor VAL1 |
6j9a_A | 2e-41 | 250 | 349 | 2 | 126 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 601 | 613 | REKRKDTGSPRKK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002460861.2 | 0.0 | B3 domain-containing protein Os07g0563300 isoform X2 | ||||
Swissprot | Q0D5G4 | 0.0 | Y7633_ORYSJ; B3 domain-containing protein Os07g0563300 | ||||
TrEMBL | A0A1B6QF04 | 0.0 | A0A1B6QF04_SORBI; Uncharacterized protein | ||||
STRING | Sb02g036430.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7490 | 36 | 47 |