PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Zmw_sc00623.1.g00200.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NAC

Protein Properties

Length: 278aa MW: 30898.1 Da PI: 7.391

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00623.1.g00200.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	158.7	2.3e-49	5	141	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratk 79 +ppGfrFhP+d+elv +yL +k++++ + v +++vd++k+ePwdLp +++ +e +ewyfFs d+ky+tg+r+nrat+ Zmw_sc00623.1.g00200.1.am.mk 5 MPPGFRFHPRDDELVLDYLLPKLSDHCHARGGVaMADVDVNKCEPWDLPeECCVSEGNEWYFFSLPDRKYTTGERTNRATR 85 79********************9997776777***********667778899******************* PP NAM 80 sgyWkatgkdkevlskkgel.......vglkktLvfykgrapkgektdWvmheyrl 128 sgyWkatgkd++v++++++ vg +ktLvfy+grap+g+kt Wvmhe+r+ Zmw_sc00623.1.g00200.1.am.mk 86 SGYWKATGKDRAVVAADDKIvktpatlVGRRKTLVFYTGRAPNGRKTAWVMHEFRV 141 ***********844445666777*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.22E-53	3	163	IPR003441	NAC domain
PROSITE profile	PS51005	52.815	5	163	IPR003441	NAC domain
Pfam	PF02365	6.1E-25	6	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MEARMPPGFR FHPRDDELVL DYLLPKLSDH CHARGGVAMA DVDVNKCEPW DLPEECCVSE 60 GNEWYFFSLP DRKYTTGERT NRATRSGYWK ATGKDRAVVA ADDKIVKTPA TLVGRRKTLV 120 FYTGRAPNGR KTAWVMHEFR VELPSPPRLG REGNWVLCRV LYKSGTTTPR PASEDQAGMP 180 TSYEPDLPVT APPVIAAFNA IDGSRTAAGQ VSCFSGLPAL PFRRPVSRGD GHAMDISEKQ 240 ATGIMVSSMA SMISTGLELA PNWEQENDMA QLWNRLYC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-39	2	166	14	168	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-39	2	166	14	168	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-39	2	166	14	168	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-39	2	166	14	168	NO APICAL MERISTEM PROTEIN
3swm_A	2e-39	2	166	17	171	NAC domain-containing protein 19
3swm_B	2e-39	2	166	17	171	NAC domain-containing protein 19
3swm_C	2e-39	2	166	17	171	NAC domain-containing protein 19
3swm_D	2e-39	2	166	17	171	NAC domain-containing protein 19
3swp_A	2e-39	2	166	17	171	NAC domain-containing protein 19
3swp_B	2e-39	2	166	17	171	NAC domain-containing protein 19
3swp_C	2e-39	2	166	17	171	NAC domain-containing protein 19
3swp_D	2e-39	2	166	17	171	NAC domain-containing protein 19
4dul_A	2e-39	2	166	14	168	NAC domain-containing protein 19
4dul_B	2e-39	2	166	14	168	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002443999.1	1e-109	NAC domain-containing protein 21/22
TrEMBL	C5YIE8	1e-107	C5YIE8_SORBI; Uncharacterized protein
STRING	Sb07g005610.1	1e-108	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1012	37	138