PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00622.1.g00290.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | ERF | ||||||||
Protein Properties | Length: 430aa MW: 45928.9 Da PI: 9.0663 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.3 | 3.8e-18 | 199 | 248 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+WvAeIr p++ r+r +lg+f++ae+Aa a+++ + kl+g Zmw_sc00622.1.g00290.1.am.mk 199 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDSAEDAAMAYDREAFKLRG 248 59******9.**********955...5*************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 6.59E-30 | 198 | 257 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 2.5E-31 | 199 | 257 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.695 | 199 | 256 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.3E-37 | 199 | 262 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.44E-22 | 199 | 258 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.8E-10 | 200 | 211 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.4E-11 | 200 | 248 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.8E-10 | 222 | 238 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 430 aa Download sequence Send to blast |
MESSSGSGES SACGGAGDRG RRWKGKGVTL TPIQPRRQLA PVMEDVSVAS SLRPLRKIGR 60 AADRLQRTAS SLSTYSSSAP PSPRSIAVSS SAPSEGHIFP FAYEPSTQTA GGSPRLLPTW 120 QQSSLSQPAS PQQRPLQRQQ MISFGEPPQY HAQFLGPESP VQLRYWSEAL NLSPRGGQAG 180 GGVLPSLYQH LLRAPPQKLY RGVRQRHWGK WVAEIRLPRN RTRLWLGTFD SAEDAAMAYD 240 REAFKLRGDN ARLNFPDRFL GKGRAGGSGR TSASSAAALG ASCSSSSPSP PPTPDEANLQ 300 QTAVLRRAEG SAEKQTQTPV ATSSVEEGSS GDTAMPYLAE MFHAPVVSGI DWSPVDEAWF 360 STWGPGSSLW DYDMDGARGI FLNGHFAGDE SGMEHSNAQE ASAATGTDIA CNHVPVTPAS 420 SSPTHFRAAP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-19 | 198 | 258 | 4 | 65 | ATERF1 |
3gcc_A | 1e-19 | 198 | 258 | 4 | 65 | ATERF1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025824927.1 | 1e-166 | ethylene-responsive transcription factor ERF054-like isoform X1 | ||||
TrEMBL | A0A2S3I9S3 | 1e-165 | A0A2S3I9S3_9POAL; Uncharacterized protein | ||||
STRING | Si012169m | 1e-159 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3691 | 32 | 68 |