PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00604.1.g00130.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family E2F/DP
Protein Properties Length: 427aa    MW: 46250.9 Da    PI: 5.2529
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00604.1.g00130.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP78.18.5e-25195254771
                         E2F_TDP   7 rlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                                     +llt+kf++ll+ +e+g+++ln++a +L   +v  ++RRiYDi+NVLe++nliek++kn irwkg
  Zmw_sc00604.1.g00130.1.sm.mkhc 195 GLLTKKFINLLQGVEDGTIDLNKAAATL---EV--QKRRIYDITNVLEGINLIEKSNKNMIRWKG 254
                                     589*************************...99..****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM013721.1E-25193254IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.0E-21195254IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.4E-24195255IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467857.44E-15196255IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000902Biological Processcell morphogenesis
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0051782Biological Processnegative regulation of cell division
GO:0005667Cellular Componenttranscription factor complex
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MDGGSSSLPI SPPPPPQVYL RGPAPPPGPA PPPKVHFFRS PATTPVFTAR RPGPRAAPKP  60
PMPPPAALAP PRPQQPPPTT AAKERLPPRQ PQPSPAAGAM RPPQQPSAAG AMLPPPAPQD  120
AAPQDAAKGQ QKATPPCNEE NNGREISKAE IKTEETEEGH DKASTTAPVK IIKRPKKGKA  180
SKHTLNASDG GAIEGLLTKK FINLLQGVED GTIDLNKAAA TLEVQKRRIY DITNVLEGIN  240
LIEKSNKNMI RWKGFDMSKP KEIECQISAL KEELESLYEE DDRLENEIRE AQEKLEALVL  300
DEDKRKSRTS DSQDLFNQYH QAMPDNSEPV VTAGSGQALQ HMDCDPNQSV EQMDCDPTEA  360
VQQMDCDPSR ALKKGESNAA CTHTKAPSRE HETMSGILRI VPSDSNADAD YWFASDLDVG  420
VTDTWGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A3e-171952541373PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00190DAPTransfer from AT1G47870Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975004.11e-112transcription factor E2FC
TrEMBLA0A3L6Q6V51e-118A0A3L6Q6V5_PANMI; Transcription factor E2FC-like
STRINGGRMZM2G050590_P011e-102(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62537148