PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00602.1.g00280.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 407aa MW: 42840.5 Da PI: 4.644

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00602.1.g00280.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.3	0.00025	376	400	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ykCp C+k ++ s+++rH r++ Zmw_sc00602.1.g00280.1.sm.mkhc 376 YKCPtpGCSKIYKFVSDFVRHTRRC 400 9**********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.46E-6	366	399	No hit	No description
Gene3D	G3DSA:3.30.160.60	2.3E-6	367	398	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding

Sequence ? help Back to Top
Protein Sequence Length: 407 aa Download sequence Send to blast
MRIRRYAARL LSSSAAATNP GSPPPQPAAA WLHAAEDDCC AFCDLIHSSQ QSGVPWKSQE 60 SPEVVKHKGH IAGRVPESEV KSGEHVDLAE GLPAPEAKNC KIDHGHPFNE ADAALGVTND 120 GSVVNEAVVK LEDARGADLV TRADVKPTFK AGQPGPFDAE DGTIEQKVKC RSSLVTDAVK 180 PEFIGENSPV NELAAELEVL KGAPLSNKVD FDPEVTERAS LENRTATMPG VTGIEPDDAH 240 GASIMNQSGM ELRAIRAASV VNEASAEPEL KEGVSLISTT ATDAGATIAV PEVTRTGSLG 300 NDGAIGSEVK WGASLVQEAA EREATEDAVA SQAAWETEDT GAASCNADDD PALDDPRPPS 360 CDTTGNVQVH AGAKPYKCPT PGCSKIYKFV SDFVRHTRRC KPQRLRG

Sequence ? help Back to Top

Protein Sequence Length: 407 aa Download sequence Send to blast

MRIRRYAARL LSSSAAATNP GSPPPQPAAA WLHAAEDDCC AFCDLIHSSQ QSGVPWKSQE  60
SPEVVKHKGH IAGRVPESEV KSGEHVDLAE GLPAPEAKNC KIDHGHPFNE ADAALGVTND  120
GSVVNEAVVK LEDARGADLV TRADVKPTFK AGQPGPFDAE DGTIEQKVKC RSSLVTDAVK  180
PEFIGENSPV NELAAELEVL KGAPLSNKVD FDPEVTERAS LENRTATMPG VTGIEPDDAH  240
GASIMNQSGM ELRAIRAASV VNEASAEPEL KEGVSLISTT ATDAGATIAV PEVTRTGSLG  300
NDGAIGSEVK WGASLVQEAA EREATEDAVA SQAAWETEDT GAASCNADDD PALDDPRPPS  360
CDTTGNVQVH AGAKPYKCPT PGCSKIYKFV SDFVRHTRRC KPQRLRG

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11491	32	41