PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00593.1.g00100.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | GRAS | ||||||||
Protein Properties | Length: 417aa MW: 45092.2 Da PI: 6.5848 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 281.3 | 2.9e-86 | 35 | 415 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaal 81 ++lLl+cA a++s+d +laq++++ l+++as +gdp+qRl++ +++AL ar r ++ + lp++ ++ +++++++ Zmw_sc00593.1.g00100.1.am.mk 35 QQLLLHCAAALESNDVTLAQQAMWVLNNIASAQGDPNQRLTSWLLRALVARACRlCGPAAAVRLPANGAP---RERAMSVT 112 699***************************************************4444444444544444...33344444 PP GRAS 82 kl..fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skee 157 +l +++++P+++f++ + N aIl+av+ + +vH+iD+++++++QWp+L++ L++Rp+gpp lRiT+ ++ ++ + + Zmw_sc00593.1.g00100.1.am.mk 113 ELadYVDLTPWHRFGFTASNGAILRAVADSAAVHVIDLSVTHCMQWPTLIDVLSKRPGGPPALRITVPSARPAVpplLAVS 193 4466**************************************************************999966668888888 PP GRAS 158 leetgerLakfAeelgvpfefnvl...........vakrledl.........eleeLrvkpgEalaVnlvlqlhrlldesv 218 ee+g rL +fA++ gv++efnv+ + ++ +L ++ gEal+Vn++ l +++ Zmw_sc00593.1.g00100.1.am.mk 194 DEELGLRLVNFAKSKGVQLEFNVVktkapsaekldA------SrhdlasvlsDPPSLGLRDGEALVVNCQSWLRHVV---- 264 89**********************887775544331......2333344466788889999*************998.... PP GRAS 219 sleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvva 299 +s rd++L +v+sl+P++v+v++++ad++s+s++ r++ ++++++ lfd+l++++pr+s +r E + +g++i++vv Zmw_sc00593.1.g00100.1.am.mk 265 --PSSRDTFLYAVRSLNPRLVTVTDEDADLDSPSLASRIAGCFNFHWILFDALDTSAPRDSPWRLEHETA-VGKKIESVVG 342 ..66789**************************************************************9.********** PP GRAS 300 cegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 g+ er e+ ++ er+++ GF v+++e++a+q+++ll++++ g+ v+ e++ l+l+Wk++ v +SaW+ Zmw_sc00593.1.g00100.1.am.mk 343 VDGDG-AERSESGARLAERMRRNGFVGVRFEEEEAAQVRRLLSEHA-TGWGVKREEDMLLLTWKGHGAVYTSAWT 415 ****9.****************************************.99*************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 41.789 | 8 | 396 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 9.9E-84 | 35 | 415 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 417 aa Download sequence Send to blast |
MEQEVRSGGG GGGGDLRAHS SVCFSGALID GPRIQQLLLH CAAALESNDV TLAQQAMWVL 60 NNIASAQGDP NQRLTSWLLR ALVARACRLC GPAAAVRLPA NGAPRERAMS VTELADYVDL 120 TPWHRFGFTA SNGAILRAVA DSAAVHVIDL SVTHCMQWPT LIDVLSKRPG GPPALRITVP 180 SARPAVPPLL AVSDEELGLR LVNFAKSKGV QLEFNVVKTK APSAEKLDAS RHDLASVLSD 240 PPSLGLRDGE ALVVNCQSWL RHVVPSSRDT FLYAVRSLNP RLVTVTDEDA DLDSPSLASR 300 IAGCFNFHWI LFDALDTSAP RDSPWRLEHE TAVGKKIESV VGVDGDGAER SESGARLAER 360 MRRNGFVGVR FEEEEAAQVR RLLSEHATGW GVKREEDMLL LTWKGHGAVY TSAWTPN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_B | 2e-50 | 37 | 417 | 90 | 475 | Protein SHORT-ROOT |
5b3h_B | 7e-51 | 37 | 417 | 36 | 421 | Protein SHORT-ROOT |
5b3h_E | 7e-51 | 37 | 417 | 36 | 421 | Protein SHORT-ROOT |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025806480.1 | 0.0 | scarecrow-like protein 32 | ||||
TrEMBL | A0A2S3HAR1 | 0.0 | A0A2S3HAR1_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7EBX3 | 0.0 | A0A2T7EBX3_9POAL; Uncharacterized protein | ||||
STRING | Si022117m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12227 | 32 | 38 |