PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00587.1.g00230.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 348aa    MW: 37344.9 Da    PI: 7.9378
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00587.1.g00230.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.69.9e-21169218255
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                    y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ +l+g
  Zmw_sc00587.1.g00230.1.am.mk 169 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDQAAYRLRG 218
                                   59******9.**********955...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.12E-30168228No hitNo description
SMARTSM003801.5E-35169232IPR001471AP2/ERF domain
SuperFamilySSF541716.47E-23169228IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.2E-32169228IPR001471AP2/ERF domain
PROSITE profilePS5103223.354169226IPR001471AP2/ERF domain
PRINTSPR003673.3E-11170181IPR001471AP2/ERF domain
PfamPF008479.4E-15170218IPR001471AP2/ERF domain
PRINTSPR003673.3E-11192208IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MNESCPRAAA APPIRELRCG LFSSPPPFHS PPLRRTPQHP QPPTTTTTFP VSLSELFRSM  60
AAAIDLSGEE LMRALEPFIR DASAPHGSTS VLPHQLPSPT SPFAFHHAAA ASYSPYAAGV  120
EGAGQLSPAQ MQYIQARLHL QRQAQSVLGP RAQPMKASAA AQQPRPQKLY RGVRQRHWGK  180
WVAEIRLPRN RTRLWLGTFD TAEEAALAYD QAAYRLRGDA ARLNFPDNAA SRAPLHSSVD  240
AKLQMLCQNI AASKKASKAG AVAAATSSSA PTSNCSSPSS DDASSTSCLE SAESFSPSLS  300
PSPSPEAATV PEMQQLDFSE APWDEAAGFA LTKYPSYEID WDSLLAAN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-20168226463ATERF1
3gcc_A5e-20168226463ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004956678.11e-152ethylene-responsive transcription factor RAP2-13
TrEMBLK3ZVQ31e-150K3ZVQ3_SETIT; Uncharacterized protein
STRINGSi030684m1e-151(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203