PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00586.1.g00170.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C3H
Protein Properties Length: 497aa    MW: 53446.4 Da    PI: 7.8161
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00586.1.g00170.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.21e-06247269426
                                   ---SGGGGTS--TTTTT-SS-SS CS
                       zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                                   ++C+ f+    C++Gd C FaHg
  Zmw_sc00586.1.g00170.1.am.mk 247 VPCDSFRLADGCPRGDACDFAHG 269
                                   79999***99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF127962.1E-747129IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.9E-1559142IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484032.93E-1359141IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.80462137IPR020683Ankyrin repeat-containing domain
SMARTSM00248496292IPR002110Ankyrin repeat
CDDcd002042.21E-1364140No hitNo description
SMARTSM002480.001197129IPR002110Ankyrin repeat
PROSITE profilePS5008812.50297132IPR002110Ankyrin repeat
Gene3DG3DSA:4.10.1000.104.9E-6243270IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.76243271IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.75E-5243272IPR000571Zinc finger, CCCH-type
SMARTSM003560.021243270IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-4275306IPR000571Zinc finger, CCCH-type
SMARTSM0035620279302IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MVDGHADHAR GAGRPERLSS LLDLAAADDA AGFRAALNAA GSEAAELVDE VELWYGRSKA  60
YEPRTPLMVA ATCGGAAVVA LLLGLGCVDV NRRPGIDGAT ALHCAASGGS PNAVAVVRLL  120
LAAGADPAIP DSAGRVPADV VHAHPASPDT LAGLEALLGR RRELSPVSAL VYTTTANGGG  180
NKKAYPVDPT LPDMSSSVYA SDEFRMFALK VQPCARAYAH EWTECPFVHP GENARRRDPR  240
RHAYTAVPCD SFRLADGCPR GDACDFAHGV FESWLHPSRY RTRLCRDGAA CSRRICFFAH  300
AEHELRYVSR DGASTALLSP RTMDDMAAAA TLGLQFPRSP TGGHFLQQGS KRYAAFDACL  360
EEQVDELSAL FDFASLCRSQ PRLASIRRPS AAPPLTYMAL LPSRFGNDHG ASVYSPQPAQ  420
TSQLLARIRQ QQGVRLPPVK QREMFERPFS CPTLKHHHLR SPPVTARGYS DASWINAGCP  480
GSKVDWSFNA EELLRSP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006657856.11e-165PREDICTED: zinc finger CCCH domain-containing protein 50
RefseqXP_015695270.11e-165PREDICTED: zinc finger CCCH domain-containing protein 50
SwissprotQ84SL21e-163C3H50_ORYSJ; Zinc finger CCCH domain-containing protein 50
TrEMBLA0A0E0ED941e-164A0A0E0ED94_9ORYZ; Uncharacterized protein
TrEMBLJ3MM591e-164J3MM59_ORYBR; Uncharacterized protein
STRINGOB07G24910.11e-165(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82337126
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]