PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Zmw_sc00574.1.g00090.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NF-YA

Protein Properties

Length: 314aa MW: 34184.6 Da PI: 8.7495

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00574.1.g00090.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	97.1	1.9e-30	149	205	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 d+p+YVNaKQy++Il+RR +R+k+e+e++l k rkpylheSRh hAlrR+RgsgGrF Zmw_sc00574.1.g00090.1.sm.mkhc 149 DAPIYVNAKQYEAILRRRRAREKAEKENRL-VKVRKPYLHESRHLHALRRARGSGGRF 205 68**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	1.4E-33	147	208	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	34.808	148	208	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	9.1E-27	151	205	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	2.2E-22	151	173	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	2.2E-22	182	205	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MMGFRQFATA ASSNGAPLPW WTGAAPHQMM YGETWGQGKP PAVSPEDPCR ESRFQVVPGS 60 QALLEPLAPP SPKAVQEREF TDVMRFSIAQ GKGDKGFDHS ATVALQSPYA LYSGHFELGL 120 GHSMHYGLLA PYGVGALPGG RIPLNMPSDA PIYVNAKQYE AILRRRRARE KAEKENRLVK 180 VRKPYLHESR HLHALRRARG SGGRFLNTKK DANGKDAGAG GKTTVSNPLM LQAASPSSEI 240 QQSELGNPSS VSTLSGSEVS SMYDHEDVDH YHNFDQLRTP FFTQLPILMD GEHGAGNPFK 300 LAAASENCCD LLKA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_A	7e-17	149	207	2	61	HAPB protein
4g92_A	7e-17	149	207	2	61	HAPB protein
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004963196.1	1e-135	nuclear transcription factor Y subunit A-10
Refseq	XP_022680516.1	1e-135	nuclear transcription factor Y subunit A-10
TrEMBL	A0A0A9CZS6	1e-150	A0A0A9CZS6_ARUDO; Uncharacterized protein
STRING	Si022607m	1e-134	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2307	37	90