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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00566.1.g00410.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | bHLH | ||||||||
Protein Properties | Length: 237aa MW: 25131.4 Da PI: 9.632 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 43.9 | 4.3e-14 | 111 | 162 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+ +N+ ++ Lr l+P++ + ++ + a+++ A++Y+k+L+ Zmw_sc00566.1.g00410.1.am.mk 111 QRMTHIAVERNRRRLMNDHLASLRALIPPS---YIPRGDQATVVGGAIDYVKQLE 162 79****************************...9*******************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.28E-15 | 102 | 171 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.06E-13 | 109 | 165 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 6.3E-14 | 109 | 165 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.072 | 110 | 161 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.4E-11 | 111 | 162 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.6E-9 | 116 | 167 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MVVMEQWADH QAVSTSAATA QMPFLALLQG AVVENDDDGL RKRAASFAAC AAAADLDLFE 60 SCVTQAAAVT VASSAAPATR ADSRRRKRPR PRPRAAPQQE KRKKPEEAES QRMTHIAVER 120 NRRRLMNDHL ASLRALIPPS YIPRGDQATV VGGAIDYVKQ LEQQLVALQA EAAARRGCCV 180 GVGAVATAAS AASDGVFVSP QYASYSESPR GCAAGVDVEA TGAVGGHVRV RVAGRRW |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 83 | 93 | RRRKRPRPRPR |
2 | 85 | 91 | RKRPRPR |
3 | 85 | 103 | RKRPRPRPRAAPQQEKRKK |
4 | 86 | 90 | KRPRP |
5 | 111 | 122 | RMTHIAVERNRR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025798239.1 | 3e-73 | transcription factor bHLH57-like | ||||
TrEMBL | A0A1D6PKX5 | 9e-88 | A0A1D6PKX5_MAIZE; Putative HLH DNA-binding domain superfamily protein | ||||
STRING | OPUNC03G01600.1 | 6e-76 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7957 | 33 | 44 |