PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00561.1.g00200.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Dof

Protein Properties

Length: 441aa MW: 46211.7 Da PI: 8.2683

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00561.1.g00200.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.3	1.9e-39	103	162	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k l+cprC+s++tkfCy+nny++sqPr+fCk+C+ryWt+GGa+rnvPvG+grrknk++ Zmw_sc00561.1.g00200.1.sm.mkhc 103 PDKVLPCPRCNSMDTKFCYFNNYNVSQPRHFCKNCQRYWTAGGAMRNVPVGAGRRKNKNA 162 78999****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-30	99	160	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.3E-32	104	161	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.994	107	161	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	109	145	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 441 aa Download sequence Send to blast
MGECRGGGGG GAGDCLIKLF GKTIPVPEAG DAKDLQHSSG SSSSIDSDAN KENANQETSD 60 PPPQPEVVDA EDPKSSSSPP EPRQPSGGAD DEASNHKEKL KKPDKVLPCP RCNSMDTKFC 120 YFNNYNVSQP RHFCKNCQRY WTAGGAMRNV PVGAGRRKNK NAVAASHFLQ RVRAAVLVGG 180 DPLKTNGTVL SFGAHGAAPA LDLAEQVVGH LKEKMLMPVG NAGNHQSVVD PCSDVSSTGD 240 AKNLSDAKSN VTVPKPVNGV QHPANMNGGA TMWPYSCAPP SQAYYPSGIA IPIYPAAPGY 300 WGCMVPGGWS PLPWPLQPPT QGLSSPTSTA PSVSSGAGHS LTLGKHAREG DEGRSHGSGK 360 VWAPKTIRIG DADEVAKSSI WSLIGIKGDK QNTDTDGRKN GTVFEPKHEA KSAKQAMITS 420 SPLLHANPVA LTRSLTFQEG S

Sequence ? help Back to Top

Protein Sequence Length: 441 aa Download sequence Send to blast

MGECRGGGGG GAGDCLIKLF GKTIPVPEAG DAKDLQHSSG SSSSIDSDAN KENANQETSD  60
PPPQPEVVDA EDPKSSSSPP EPRQPSGGAD DEASNHKEKL KKPDKVLPCP RCNSMDTKFC  120
YFNNYNVSQP RHFCKNCQRY WTAGGAMRNV PVGAGRRKNK NAVAASHFLQ RVRAAVLVGG  180
DPLKTNGTVL SFGAHGAAPA LDLAEQVVGH LKEKMLMPVG NAGNHQSVVD PCSDVSSTGD  240
AKNLSDAKSN VTVPKPVNGV QHPANMNGGA TMWPYSCAPP SQAYYPSGIA IPIYPAAPGY  300
WGCMVPGGWS PLPWPLQPPT QGLSSPTSTA PSVSSGAGHS LTLGKHAREG DEGRSHGSGK  360
VWAPKTIRIG DADEVAKSSI WSLIGIKGDK QNTDTDGRKN GTVFEPKHEA KSAKQAMITS  420
SPLLHANPVA LTRSLTFQEG S

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004983151.1	0.0	cyclic dof factor 1
TrEMBL	K4AA81	0.0	K4AA81_SETIT; Uncharacterized protein
STRING	Si035787m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2099	37	93