PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00554.1.g00090.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 536aa    MW: 58104.3 Da    PI: 8.5707
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00554.1.g00090.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.34.4e-19237286255
                           AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                   +y+GVr ++ +gr++AeIrd +     r +r++lg+++t+ eAa a+++a+++l+g
  Zmw_sc00554.1.g00090.1.am.mk 237 HYRGVRKRP-WGRYAAEIRDpW-----RkTRVWLGTYDTPVEAALAYDRAALALRG 286
                                   7********.**********88.....45*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.694237294IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-28237294IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-21237294IPR016177DNA-binding domain
SMARTSM003808.2E-32237300IPR001471AP2/ERF domain
PfamPF008471.0E-12237286IPR001471AP2/ERF domain
CDDcd000182.53E-26237293No hitNo description
PRINTSPR003675.6E-9238249IPR001471AP2/ERF domain
PRINTSPR003675.6E-9260276IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    Send to blast
MARHRRGPAS VERRSGTRVR PSRKRAAAPH PTTRLRAPQE PRGAESCSGT SPRETSAPAS  60
RPHEEDTGAL VSGGGIESTA PRSGTPREES LHRWAGRGRQ CTGLGAQIGR AVRQGVTGRG  120
VVSSVLCRCL LLLRAVGLAS QRQADRCAKP GLRSTGRRDH SLERSLRRAT TTGRGYKTNR  180
SAAAVVTAEQ LPNQPERHHH HGSVAGAVAD GGGGARSSVA PAAVVGADQH QQLRGEHYRG  240
VRKRPWGRYA AEIRDPWRKT RVWLGTYDTP VEAALAYDRA ALALRGFKAR TNFGSGSGLG  300
RYPPAHQPPR PTPNPVQAFG GLDISQPSPW HFIYVPSRRH QSMETTEPDF DGDVAATLPS  360
TALELRTGPR SLPFDLNEPP SLMFGDTTED RIPTRIGNLI LDCAFKRDDA CMVICCIANK  420
RTEESIVFFS LHSGSIDVLC DELHQASPTS LPTTLRQPWA NSRRPDRRPN DNTEQRGDIP  480
NDGDRPDEER PDGGTDEGIR DGDEPDVDHP DGDPDDERRG GEGADEETNG GAPDGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-19234293262ATERF1
3gcc_A8e-19234293262ATERF1
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00645PBMTransfer from LOC_Os05g41760Download
Motif logo
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465