PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00554.1.g00090.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | ERF | ||||||||
Protein Properties | Length: 536aa MW: 58104.3 Da PI: 8.5707 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.3 | 4.4e-19 | 237 | 286 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +gr++AeIrd + r +r++lg+++t+ eAa a+++a+++l+g Zmw_sc00554.1.g00090.1.am.mk 237 HYRGVRKRP-WGRYAAEIRDpW-----RkTRVWLGTYDTPVEAALAYDRAALALRG 286 7********.**********88.....45*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 21.694 | 237 | 294 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.5E-28 | 237 | 294 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-21 | 237 | 294 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 8.2E-32 | 237 | 300 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.0E-12 | 237 | 286 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.53E-26 | 237 | 293 | No hit | No description |
PRINTS | PR00367 | 5.6E-9 | 238 | 249 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.6E-9 | 260 | 276 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 536 aa Download sequence Send to blast |
MARHRRGPAS VERRSGTRVR PSRKRAAAPH PTTRLRAPQE PRGAESCSGT SPRETSAPAS 60 RPHEEDTGAL VSGGGIESTA PRSGTPREES LHRWAGRGRQ CTGLGAQIGR AVRQGVTGRG 120 VVSSVLCRCL LLLRAVGLAS QRQADRCAKP GLRSTGRRDH SLERSLRRAT TTGRGYKTNR 180 SAAAVVTAEQ LPNQPERHHH HGSVAGAVAD GGGGARSSVA PAAVVGADQH QQLRGEHYRG 240 VRKRPWGRYA AEIRDPWRKT RVWLGTYDTP VEAALAYDRA ALALRGFKAR TNFGSGSGLG 300 RYPPAHQPPR PTPNPVQAFG GLDISQPSPW HFIYVPSRRH QSMETTEPDF DGDVAATLPS 360 TALELRTGPR SLPFDLNEPP SLMFGDTTED RIPTRIGNLI LDCAFKRDDA CMVICCIANK 420 RTEESIVFFS LHSGSIDVLC DELHQASPTS LPTTLRQPWA NSRRPDRRPN DNTEQRGDIP 480 NDGDRPDEER PDGGTDEGIR DGDEPDVDHP DGDPDDERRG GEGADEETNG GAPDGL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 8e-19 | 234 | 293 | 2 | 62 | ATERF1 |
3gcc_A | 8e-19 | 234 | 293 | 2 | 62 | ATERF1 |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00645 | PBM | Transfer from LOC_Os05g41760 | Download |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP103 | 37 | 465 |