PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00548.1.g00250.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C3H
Protein Properties Length: 360aa    MW: 39805.9 Da    PI: 8.4266
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00548.1.g00250.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.28.5e-11198224127
                                     --S---SGGGGTS--TTTTT-SS-SSS CS
                         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                                     ++++ C +++rtG C++G +CkF+H+p
  Zmw_sc00548.1.g00250.1.am.mkhc 198 PGEPDCTYYLRTGLCRFGMTCKFNHPP 224
                                     5789*********************97 PP
2zf-CCCH42.98.1e-14294320127
                                     --S---SGGGGTS--TTTTT-SS-SSS CS
                         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                                     +++elC+f++r+G+Ck+G++CkF H++
  Zmw_sc00548.1.g00250.1.am.mkhc 294 PGEELCKFYSRYGICKFGANCKFDHPM 320
                                     689**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.521197225IPR000571Zinc finger, CCCH-type
SMARTSM003564.5E-5197224IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-8199224IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-5202225IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.1E-4203223IPR000571Zinc finger, CCCH-type
SMARTSM003568.7E-8293320IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.591293321IPR000571Zinc finger, CCCH-type
PfamPF006426.0E-11295320IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-6295320IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-5297318IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
DTQVVGDRER EEWEREDTHR RNDWLRSLQW QAMYSSPHNS HPNKNMAMER RGGICVRENR  60
KKKCGEMRSP ALGDAYKGHG EIVRPPPLAI LLLCTDHSLP CPLPGRSSGW QQLRPPPPRS  120
RDGRRRSHSL PMEDAGRESA PAAVTVSAVP APPQPCTTNA ATDTSSPDPS ALYEEEMWQQ  180
MAMDSSATMQ PGPYPERPGE PDCTYYLRTG LCRFGMTCKF NHPPDRNLAI ASARMKGEYP  240
ERVGHPECQS QLQSPGAQQT YGPSQQVCKF HHPRVRTLPP PDCVLSPMGL PLRPGEELCK  300
FYSRYGICKF GANCKFDHPM AAPIGVYAYG FNASVSASAS TNVAGVRRLL GSPSGSGYTS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004971057.19e-79zinc finger CCCH domain-containing protein 12
SwissprotQ5JLB51e-65C3H12_ORYSJ; Zinc finger CCCH domain-containing protein 12
TrEMBLA0A3B6EPJ42e-87A0A3B6EPJ4_WHEAT; Uncharacterized protein
TrEMBLA0A446NZV32e-87A0A446NZV3_TRITD; Uncharacterized protein
STRINGSi001558m3e-78(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17256611
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Deng H,Liu H,Li X,Xiao J,Wang S
    A CCCH-type zinc finger nucleic acid-binding protein quantitatively confers resistance against rice bacterial blight disease.
    Plant Physiol., 2012. 158(2): p. 876-89
    [PMID:22158700]