PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00542.1.g00010.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

GRAS

Protein Properties

Length: 269aa MW: 29577.8 Da PI: 8.0684

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00542.1.g00010.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	71	2.3e-22	162	265	216	321
GRAS 216 esvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivn 296 s++++ + d++L+++ +l Pk++v++eq a hn+e + +r+ +a++yy +lf lea +++ r vE++ll+++++n Zmw_sc00542.1.g00010.1.am.mk 162 TSHEIT-KADALLRVLCDLTPKLLVLTEQYAYHNGEVLSNRVQNAFDYYEVLFRDLEAA-GSDPMMRGLVEHMLLKEKLMN 240 333444.599********************************************999.7888************* PP GRAS 297 vvacegaerrerhetlekWrerlee 321 +++cega++rerhe+le W r+++ Zmw_sc00542.1.g00010.1.am.mk 241 IISCEGAQHRERHENLEYWLPRMMR 265 *****************999986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	11.059	1	269	IPR005202	Transcription factor GRAS
Pfam	PF03514	7.8E-20	162	265	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence Send to blast
MSLNQSRGKG KAEVAKEDDA EQEIWLVKKK VHHQGSGPSC AGEESSSLAT APAQPPANLG 60 GDSAGGGCAC ARCERPQTQP HGASAALQYL SSVMSFAGDV ALQRVVVAFA EALERRAMQL 120 LPGLAWSLQL KVLLPPPTAA YTKDGTRPCK KRKNMDTTTA TTSHEITKAD ALLRVLCDLT 180 PKLLVLTEQY AYHNGEVLSN RVQNAFDYYE VLFRDLEAAG SDPMMRGLVE HMLLKEKLMN 240 IISCEGAQHR ERHENLEYWL PRMMRSRKS

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP36328	3	4