PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00536.1.g00120.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | DBB | ||||||||
Protein Properties | Length: 319aa MW: 33759.4 Da PI: 4.7048 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 20.6 | 9.1e-07 | 4 | 46 | 5 | 41 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 C+ +e e++ C ++ lC+ C e H H++ p Zmw_sc00536.1.g00120.1.am.mk 4 LCSSCEAAEASVLCCADDAALCARCDREVHAAnrlagkHQRLP 46 7******99*********************6577888998877 PP | |||||||
2 | zf-B_box | 27.5 | 6.5e-09 | 60 | 100 | 3 | 37 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 +++C+ ++e + +fC +++ llC++C ++ H H Zmw_sc00536.1.g00120.1.am.mk 60 PPRCDICQECDAYFFCLEDRALLCRSCDVAVHTAndfvsaH 100 689****9988********************9554555555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 1.4E-10 | 1 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 11.021 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.34E-7 | 3 | 47 | No hit | No description |
SMART | SM00336 | 1.7E-13 | 58 | 105 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 3.4E-7 | 61 | 92 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.79E-8 | 62 | 105 | No hit | No description |
PROSITE profile | PS50119 | 9.058 | 63 | 105 | IPR000315 | B-box-type zinc finger |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 319 aa Download sequence Send to blast |
MKVLCSSCEA AEASVLCCAD DAALCARCDR EVHAANRLAG KHQRLPLLAP GAASAAAVAP 60 PRCDICQECD AYFFCLEDRA LLCRSCDVAV HTANDFVSAH RRFLLTGVQV GQEQGEDDRS 120 AEQLEPEPQP SPRPPVKRAP PPPFGGQGDF SWAVAAPDAA ASLPDWSAVS EQLGSPASWH 180 AEALSRNTPK RSPAFGAGQG RVAGGVMDWP LGEFFRGVSD FGGGFGFGES GNSKAEGGSA 240 GGSPNYWSEE EDRDADEFFG QVPEMQWSVP ELPSPPTASG LHWQNGARDS AAFVPDVCSP 300 DASLRWFAAA AAGNKRRKR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020395809.1 | 1e-158 | B-box zinc finger protein 22 | ||||
TrEMBL | A0A1D6M067 | 1e-157 | A0A1D6M067_MAIZE; B-box zinc finger protein 22 | ||||
TrEMBL | A0A3L6E6D1 | 1e-157 | A0A3L6E6D1_MAIZE; B-box zinc finger protein 22 | ||||
STRING | Si022650m | 1e-145 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1794 | 33 | 82 |