PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00522.1.g00170.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

SBP

Protein Properties

Length: 888aa MW: 97337 Da PI: 7.168

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00522.1.g00170.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	68	1.9e-21	178	225	1	48
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSS CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsr 48 +Cqv++C+adl++ak+yhrrhkvCevhsk++++lv++++qrfCqqCs Zmw_sc00522.1.g00170.1.sm.mkhc 178 MCQVDDCRADLTSAKDYHRRHKVCEVHSKTTKALVANQMQRFCQQCSS 225 6*********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	5.2E-23	172	225	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	17.683	176	253	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	4.19E-21	177	225	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	3.6E-15	179	226	IPR004333	Transcription factor, SBP-box
Gene3D	G3DSA:1.25.40.20	7.5E-4	677	780	IPR020683	Ankyrin repeat-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 888 aa Download sequence Send to blast
MQREVGPQVA PPLFLHQIQQ LPPHAAAAKK RGHPWPAGPP ANKPAVVADA GAGAGNWNPR 60 MWDWDSRSLT ARPSSDALRL GSGAGQSQPQ PAARAAEASR QGSGSLNLQL GLRKDGATAM 120 DATGSAPMAA ASSPPPSAAA GQEPVVRPSK RVRSGSPGSV AGGSVGGGAA NGGGSYPMCQ 180 VDDCRADLTS AKDYHRRHKV CEVHSKTTKA LVANQMQRFC QQCSSVDDDI RPRTDSANKY 240 LSSESSNPLD ERSPSSSPPI THKFFPIHSV DEEVRHPQAA DYGEDPAMIE VSTSRAWCAP 300 PLELFKDSER PIENGSPPNP GYRSCYASTS CSDHSPSSSN SDGQDRTGRI IFKLFGKEPS 360 TIPGNLRSEI INWLKHSPTE MEGYIRPGCL VLSMYLSMPP IAWDELEENL LQRVNALIEG 420 SGVDFWRNGR FLVRTDTQLV SYKDGMTRLS KSWRTWNTPE LTFVTPIAVV GGKKTSLVLK 480 GRNLTIPGTQ IHCTNMGKYI SKQVLCSAYP GTIYDDSGVE TFDLPGEPNL TLGRCFIEVE 540 NRFRGNSFPV IVANSSVCKE LRNLEIELED SQFHDVSLDD QVHDHRQSKP RDQALHFLNE 600 LGWLFQRAAA CTPSTRSDVC DSDLIQFSTI RFKHLLLFSS ERDWCSVTRT LLDILAKRSF 660 VSEEVSQETL EMLSEIHLLN RAVKRKSSCM VHLLVQHVVM CPDNSKLYPF VPNLPGPGGL 720 TPLHLAASIE NAEDIVDALT DDPQQIGLSC WQSVLDDDGQ SPETYAKLRN HNSYNELVAQ 780 KLLDRKNNQV TIMVSKDDIL VEQLGNDGGY NKSGAQALQI RSCSQCAILD SGVLRPPLRS 840 RGLLARPYIH SMLAIAAVCV CVCVFMRALL RFNSGRSFKW ERLDFGTI

Sequence ? help Back to Top

Protein Sequence Length: 888 aa Download sequence Send to blast

MQREVGPQVA PPLFLHQIQQ LPPHAAAAKK RGHPWPAGPP ANKPAVVADA GAGAGNWNPR  60
MWDWDSRSLT ARPSSDALRL GSGAGQSQPQ PAARAAEASR QGSGSLNLQL GLRKDGATAM  120
DATGSAPMAA ASSPPPSAAA GQEPVVRPSK RVRSGSPGSV AGGSVGGGAA NGGGSYPMCQ  180
VDDCRADLTS AKDYHRRHKV CEVHSKTTKA LVANQMQRFC QQCSSVDDDI RPRTDSANKY  240
LSSESSNPLD ERSPSSSPPI THKFFPIHSV DEEVRHPQAA DYGEDPAMIE VSTSRAWCAP  300
PLELFKDSER PIENGSPPNP GYRSCYASTS CSDHSPSSSN SDGQDRTGRI IFKLFGKEPS  360
TIPGNLRSEI INWLKHSPTE MEGYIRPGCL VLSMYLSMPP IAWDELEENL LQRVNALIEG  420
SGVDFWRNGR FLVRTDTQLV SYKDGMTRLS KSWRTWNTPE LTFVTPIAVV GGKKTSLVLK  480
GRNLTIPGTQ IHCTNMGKYI SKQVLCSAYP GTIYDDSGVE TFDLPGEPNL TLGRCFIEVE  540
NRFRGNSFPV IVANSSVCKE LRNLEIELED SQFHDVSLDD QVHDHRQSKP RDQALHFLNE  600
LGWLFQRAAA CTPSTRSDVC DSDLIQFSTI RFKHLLLFSS ERDWCSVTRT LLDILAKRSF  660
VSEEVSQETL EMLSEIHLLN RAVKRKSSCM VHLLVQHVVM CPDNSKLYPF VPNLPGPGGL  720
TPLHLAASIE NAEDIVDALT DDPQQIGLSC WQSVLDDDGQ SPETYAKLRN HNSYNELVAQ  780
KLLDRKNNQV TIMVSKDDIL VEQLGNDGGY NKSGAQALQI RSCSQCAILD SGVLRPPLRS  840
RGLLARPYIH SMLAIAAVCV CVCVFMRALL RFNSGRSFKW ERLDFGTI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj0_A	3e-20	174	224	1	51	squamosa promoter-binding protein-like 12
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021320166.1	0.0	squamosa promoter-binding-like protein 15
Swissprot	A2YX04	0.0	SPL15_ORYSI; Squamosa promoter-binding-like protein 15
Swissprot	Q6Z8M8	0.0	SPL15_ORYSJ; Squamosa promoter-binding-like protein 15
TrEMBL	A0A1B6PIZ0	0.0	A0A1B6PIZ0_SORBI; Uncharacterized protein
STRING	Pavir.Fb01917.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5456	38	53