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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00508.1.g00420.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | NF-YA | ||||||||
Protein Properties | Length: 220aa MW: 24238.9 Da PI: 10.056 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 107.9 | 8.3e-34 | 114 | 170 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RRq Rakle+e+kl ksrkpylheSRh+hA++R+RgsgGrF Zmw_sc00508.1.g00420.1.sm.mkhc 114 EEPIYVNAKQYHAILRRRQLRAKLEAENKL-VKSRKPYLHESRHQHAMKRARGSGGRF 170 69****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 9.5E-39 | 112 | 173 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 39.404 | 113 | 173 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 1.8E-29 | 115 | 170 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 3.5E-25 | 116 | 138 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 118 | 138 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 3.5E-25 | 147 | 170 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MPPPHRSENG TIMIQFGHQM PDYDSSATQS TSGSQQEVSG MSEGNLNEHN DRSGNLNGYT 60 KSDENKMLSA LSLGNPETAH AHQKSDRSQS YMHHQIVGMV PSSRVPLPIE PAAEEPIYVN 120 AKQYHAILRR RQLRAKLEAE NKLVKSRKPY LHESRHQHAM KRARGSGGRF LNTKQQAEAT 180 GGCGGSSDAH RAPANNGGLF AKHEHGLPPG DLRYHPRRGA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 7e-24 | 114 | 176 | 2 | 64 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004985516.1 | 1e-123 | nuclear transcription factor Y subunit A-7 isoform X2 | ||||
Swissprot | Q9LVJ7 | 2e-40 | NFYA6_ARATH; Nuclear transcription factor Y subunit A-6 | ||||
TrEMBL | K4AEG2 | 1e-121 | K4AEG2_SETIT; Uncharacterized protein | ||||
STRING | Si037269m | 1e-122 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1373 | 38 | 121 |
Publications ? help Back to Top | |||
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