PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00502.1.g00060.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 105aa MW: 11592.6 Da PI: 10.8965 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 98 | 3.8e-31 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien + rqvtfskRrng+lKKA+ELSvLCdaeva+i+fs++gklye++s Zmw_sc00502.1.g00060.1.sm.mk 9 KRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGKLYEFAS 59 79***********************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 7.9E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.777 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.57E-29 | 3 | 67 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.8E-32 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.85E-38 | 3 | 59 | No hit | No description |
Pfam | PF00319 | 8.0E-28 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.8E-32 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.8E-32 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 105 aa Download sequence Send to blast |
MVRGKTELKR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVALIVFSP RGKLYEFASA 60 ARCVSRLVSL PHESADCKSI RTPFRSVSNS RSPLLPVVAT DALVV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 3e-18 | 1 | 74 | 1 | 78 | MEF2 CHIMERA |
6byy_B | 3e-18 | 1 | 74 | 1 | 78 | MEF2 CHIMERA |
6byy_C | 3e-18 | 1 | 74 | 1 | 78 | MEF2 CHIMERA |
6byy_D | 3e-18 | 1 | 74 | 1 | 78 | MEF2 CHIMERA |
6bz1_A | 4e-18 | 1 | 74 | 1 | 78 | MEF2 CHIMERA |
6bz1_B | 4e-18 | 1 | 74 | 1 | 78 | MEF2 CHIMERA |
6bz1_C | 4e-18 | 1 | 74 | 1 | 78 | MEF2 CHIMERA |
6bz1_D | 4e-18 | 1 | 74 | 1 | 78 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001168784.1 | 7e-36 | uncharacterized LOC100382583 | ||||
Refseq | XP_008658827.1 | 8e-36 | uncharacterized protein LOC100382583 isoform X1 | ||||
Swissprot | P0C5B2 | 1e-35 | MAD56_ORYSJ; MADS-box transcription factor 56 | ||||
TrEMBL | A0A1D6P8V7 | 1e-35 | A0A1D6P8V7_MAIZE; Agamous-like MADS-box protein AGL14 | ||||
STRING | Pavir.J22336.1.p | 3e-36 | (Panicum virgatum) | ||||
STRING | GRMZM2G070034_P01 | 3e-35 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP129 | 38 | 398 |
Publications ? help Back to Top | |||
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