PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00491.1.g00160.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 280aa    MW: 30575.2 Da    PI: 5.806
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00491.1.g00160.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY67.12.8e-21109170259
                                   --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEE.E-SSSTTEEEEEEES--SS- CS
                          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkve.rsaedpkvveitYegeHnhe 59 
                                   +Dgy WrKYGqK ++++ fpr Y+rC+++   gCp+ k+v+ rs+ dp   +++Y +eH+++
  Zmw_sc00491.1.g00160.1.am.mk 109 SDGYLWRKYGQKRITNTSFPRCYFRCSYHrerGCPASKQVQqRSHGDPPQYDVVYVNEHTCD 170
                                   7***************************99999*******737889**************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.5E-2394171IPR003657WRKY domain
SuperFamilySSF1182902.09E-21103171IPR003657WRKY domain
SMARTSM007746.3E-31108171IPR003657WRKY domain
PROSITE profilePS5081117.385109172IPR003657WRKY domain
PfamPF031065.7E-23110170IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MQTHSRFSVG SSPPADEHEA VIRELTRGHE LTAQLQAEAL RALRGQGQAE DTAKFILQEV  60
SCAFAICLAI MSSPAHAPPP TEPGAPATRR PSRDENVPRR EIVTCAPHSD GYLWRKYGQK  120
RITNTSFPRC YFRCSYHRER GCPASKQVQQ RSHGDPPQYD VVYVNEHTCD TAAWEPEVAA  180
SPAAAGATSP LLDLPGLLAR QRRGVXXXXX XXXXXXSSTG VAFGQEQQQQ QHGASADPSS  240
RGGQLPQLDV DAELDVMDYD VTGAVYIGDS YGLPDEGLPF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A8e-141101691068OsWRKY45
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002458684.12e-81probable WRKY transcription factor 64
TrEMBLA0A3L6FPV33e-80A0A3L6FPV3_MAIZE; Putative WRKY transcription factor 38
TrEMBLC5XNA24e-80C5XNA2_SORBI; Uncharacterized protein
STRINGSb03g038200.17e-81(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125382837