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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00487.1.g00240.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | WRKY | ||||||||
Protein Properties | Length: 661aa MW: 70350.7 Da PI: 8.7257 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 95.9 | 2.7e-30 | 405 | 463 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed+ v+++tYeg+Hnh+ Zmw_sc00487.1.g00240.1.am.mk 405 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAaGCPVRKQVQRCAEDKAVLVTTYEGTHNHP 463 7***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 9.8E-33 | 389 | 465 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.18E-27 | 397 | 465 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.78 | 399 | 465 | IPR003657 | WRKY domain |
SMART | SM00774 | 8.5E-37 | 404 | 464 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.2E-26 | 406 | 463 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 661 aa Download sequence Send to blast |
MGWEENKRMR TPLISPLRLP RLDLLGRLGL DLRAFVASSR PLPKSQPSYR STWTRFPPAS 60 GTCHADAPSD AAGPPSPTRS HWSNSLLPAD PSPFLTSPKS KPFRFTFRAR YVVVMDVVPL 120 VRLMRPLAMR PLPIPSMDLA ASRTQHHHRQ EEEEEEEKAM ILSERGSRLR RSEIREVDFF 180 SIGGGALASP REREEGLGED DGAGGNGGGG SRERHGPSTG RDDNVVNTAL DLLTTAGAAN 240 TVVGHGGGEG TVAGRTDHRE VDMATVEGAL RQAGEENRRL RQRLDDLTRS YSTLYYQLLQ 300 AQQQHQASSA STNSTLLHQQ QFTDPRMLSP AIRPPAPVVL DGGSDRASSD GGSGEAEDRR 360 GQQDGTGTPE RGENAEGGAG AAAADAPCRR ARVSVRARSE APMISDGCQW RKYGQKMAKG 420 NPCPRAYYRC TMAAGCPVRK QVQRCAEDKA VLVTTYEGTH NHPLPPAAAA MAKTTSAAAA 480 MLLSGPAVSR DAAAGAMFGH HHVVAPPPPP LFHHLYGMGG ATLSXALCLR AVPDHHPRPH 540 TLADGAVRPP SSVPTLPFPM YGFPGHRPLM PPPTTVIGTD GRSRSALETM TAAITSDPNF 600 TTVLATALSS IMAGGADGAS RLGAGDAGDG NGEGAAEPTT AAAARETALR TLLQRLHESR 660 H |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 6e-22 | 395 | 465 | 8 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 6e-22 | 395 | 465 | 8 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012699836.1 | 1e-137 | probable WRKY transcription factor 47 | ||||
TrEMBL | A0A1E5W7H0 | 1e-140 | A0A1E5W7H0_9POAL; WRKY transcription factor 6 | ||||
STRING | Pavir.J02788.1.p | 1e-138 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4358 | 32 | 60 |