PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00482.1.g00190.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

M-type_MADS

Protein Properties

Length: 399aa MW: 43734.6 Da PI: 7.5987

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00482.1.g00190.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	98.4	3e-31	111	161	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s Zmw_sc00482.1.g00190.1.am.mk 111 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGKLYEFCS 161 79***********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	5.6E-41	103	162	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	33.277	103	163	IPR002100	Transcription factor, MADS-box
CDD	cd00265	4.92E-40	104	162	No hit	No description
SuperFamily	SSF55455	3.01E-29	104	167	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.9E-32	105	125	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	105	159	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	7.9E-26	112	159	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.9E-32	125	140	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.9E-32	140	161	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 399 aa Download sequence Send to blast
LISGPLAPTG CFAERARSLT SAQLLPPVHE MSPTTITTTV LLVEARLQLP SLSSSLLALL 60 LSCLGCLLGE SDLAAEAEGS WGGKGKQQQQ EEAPPPPPPA TAMGRGRVEL KRIENKINRQ 120 VTFAKRRNGL LKKAYELSVL CDAEVALIIF STRGKLYEFC STQRPARPAI GEDEKQVAFL 180 EYWLMDPELG FGGVPGRDPG DTFGFRLEES NQVLWQQAWE HGERQPEVQP PQPQLHGGNG 240 FFHPLDAAGE TTLQIGYLRR FVAVLHLPTR GGIFEGLRDR PTKWGLRASA EDKPRRKKHQ 300 DLERSGAYDR TEVQHLPMHP VRFKSCSGLA VEMSEGRKPP CAPSTTFSLP EISTQAPSHP 360 SAVHGHGGEK KESSSKVWED LVDSHQRGPM PDNTGAAGR

Sequence ? help Back to Top

Protein Sequence Length: 399 aa Download sequence Send to blast

LISGPLAPTG CFAERARSLT SAQLLPPVHE MSPTTITTTV LLVEARLQLP SLSSSLLALL  60
LSCLGCLLGE SDLAAEAEGS WGGKGKQQQQ EEAPPPPPPA TAMGRGRVEL KRIENKINRQ  120
VTFAKRRNGL LKKAYELSVL CDAEVALIIF STRGKLYEFC STQRPARPAI GEDEKQVAFL  180
EYWLMDPELG FGGVPGRDPG DTFGFRLEES NQVLWQQAWE HGERQPEVQP PQPQLHGGNG  240
FFHPLDAAGE TTLQIGYLRR FVAVLHLPTR GGIFEGLRDR PTKWGLRASA EDKPRRKKHQ  300
DLERSGAYDR TEVQHLPMHP VRFKSCSGLA VEMSEGRKPP CAPSTTFSLP EISTQAPSHP  360
SAVHGHGGEK KESSSKVWED LVDSHQRGPM PDNTGAAGR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	9e-19	103	162	1	60	MEF2C
5f28_B	9e-19	103	162	1	60	MEF2C
5f28_C	9e-19	103	162	1	60	MEF2C
5f28_D	9e-19	103	162	1	60	MEF2C
6byy_A	8e-19	103	162	1	60	MEF2 CHIMERA
6byy_B	8e-19	103	162	1	60	MEF2 CHIMERA
6byy_C	8e-19	103	162	1	60	MEF2 CHIMERA
6byy_D	8e-19	103	162	1	60	MEF2 CHIMERA
6bz1_A	8e-19	103	162	1	60	MEF2 CHIMERA
6bz1_B	8e-19	103	162	1	60	MEF2 CHIMERA
6bz1_C	8e-19	103	162	1	60	MEF2 CHIMERA
6bz1_D	8e-19	103	162	1	60	MEF2 CHIMERA

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP28144	3	5