PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00475.1.g00180.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

WRKY

Protein Properties

Length: 487aa MW: 53507.5 Da PI: 10.3375

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00475.1.g00180.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	100.8	8.2e-32	409	467	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vk++++prsYYrCt+ +C+vkk+ver aedp++v++tYeg+H h+ Zmw_sc00475.1.g00180.1.am.mk 409 LDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHVHS 467 59********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	5.6E-33	394	467	IPR003657	WRKY domain
SuperFamily	SSF118290	4.05E-28	401	468	IPR003657	WRKY domain
PROSITE profile	PS50811	29.356	404	469	IPR003657	WRKY domain
SMART	SM00774	9.8E-37	409	468	IPR003657	WRKY domain
Pfam	PF03106	1.1E-24	410	466	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 487 aa Download sequence Send to blast
MLAYPAPRNT QHQKNSRCVA CCVRACVLCR RSLVCDDNGD ECSESGDPSR CAVRSADTHG 60 SRCKVVHMHM HMPASRVLLA SCDPPRACAV PSPISRPRRP LWAFGHSSRR RPTANNILLR 120 AIHCHQLTEP RSRTGERAFC RGEGDERTNR DRRSARDQPL VFKGCDKLRS SINRGPPSSD 180 RLDLSIDLSG ILVFLAFFCS AIDRLIRWWC TAPRSSHGTL YSQRQLSPNS FVPKAVMAPG 240 HGTQLSSTAA MAAAFSSTPT MTFAFQPAPP TSDLSHHHGV LGYGSALVLD CPTTTGGASS 300 SSSHAPSSTI PSSNLHHLHA AAAAHVSLPT RSSPPHPWPS DERNQDKKRE KGAALAAGKR 360 SGRGLQQGAA RGVGSTVRMK KAGGGGGKAR RQVREPRFCF KTMSDVDVLD DGYKWRKYGQ 420 KVVKNTQHPR SYYRCTQDNC RVKKRVERLA EDPRMVITTY EGRHVHSPSR DDEDDAARAS 480 AEMSFLW

Sequence ? help Back to Top

Protein Sequence Length: 487 aa Download sequence Send to blast

MLAYPAPRNT QHQKNSRCVA CCVRACVLCR RSLVCDDNGD ECSESGDPSR CAVRSADTHG  60
SRCKVVHMHM HMPASRVLLA SCDPPRACAV PSPISRPRRP LWAFGHSSRR RPTANNILLR  120
AIHCHQLTEP RSRTGERAFC RGEGDERTNR DRRSARDQPL VFKGCDKLRS SINRGPPSSD  180
RLDLSIDLSG ILVFLAFFCS AIDRLIRWWC TAPRSSHGTL YSQRQLSPNS FVPKAVMAPG  240
HGTQLSSTAA MAAAFSSTPT MTFAFQPAPP TSDLSHHHGV LGYGSALVLD CPTTTGGASS  300
SSSHAPSSTI PSSNLHHLHA AAAAHVSLPT RSSPPHPWPS DERNQDKKRE KGAALAAGKR  360
SGRGLQQGAA RGVGSTVRMK KAGGGGGKAR RQVREPRFCF KTMSDVDVLD DGYKWRKYGQ  420
KVVKNTQHPR SYYRCTQDNC RVKKRVERLA EDPRMVITTY EGRHVHSPSR DDEDDAARAS  480
AEMSFLW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	2e-24	400	466	8	74	Probable WRKY transcription factor 4
2lex_A	2e-24	400	466	8	74	Probable WRKY transcription factor 4
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025818604.1	2e-87	probable WRKY transcription factor 13
TrEMBL	A0A3L6SQQ7	2e-89	A0A3L6SQQ7_PANMI; Putative WRKY transcription factor 12
STRING	GRMZM2G151444_P01	2e-85	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1138	38	130