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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00467.1.g00210.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | SBP | ||||||||
Protein Properties | Length: 502aa MW: 53417.4 Da PI: 9.3001 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 136.3 | 9.5e-43 | 192 | 267 | 1 | 76 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +CqvegC++dl+ ak+y+ rhkvC+vhsk+p v+v g+eqrfCqqCsrfh+l efD+ekrsCrrrLa+hnerrrk+ Zmw_sc00467.1.g00210.1.am.mk 192 RCQVEGCDVDLTGAKTYYYRHKVCSVHSKTPLVIVGGIEQRFCQQCSRFHKLPEFDQEKRSCRRRLAGHNERRRKP 267 6*************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 6.8E-33 | 186 | 254 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.941 | 190 | 267 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.88E-40 | 191 | 272 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 9.7E-33 | 193 | 266 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 502 aa Download sequence Send to blast |
MACYVTLAFA ALSSRHEVLR SLRDDDGLLA KHSRRAADRD GERERWRREL GRLVCCERVR 60 SLPLLSLSPS PPRSLSPLLS LPEREEGAEN LLQPPPPLHS SSPRSQLTGA AMATASSGAG 120 GGGSGGGGDD QLHGLKFGKK IYFEDAGASG SGSSSGSGSA PLPPGPPPTS RATGGGRRGR 180 GAASSSSAAP ARCQVEGCDV DLTGAKTYYY RHKVCSVHSK TPLVIVGGIE QRFCQQCSRF 240 HKLPEFDQEK RSCRRRLAGH NERRRKPPPG TLASRYGRFA ASFGEEPSRF RSFMLDFSYP 300 RVSSSMRDGW PAARSGERVP GNIQWQGNLD PHHHHSAAVG YGTHSYGSEG SSTPEPPVFP 360 GPELPPGGCL ARVPADSSCA LSLLSTQPWG TTHSASHSRA AALPATTGFD GNPVAPSLMA 420 SNYITPSPWT GPRGHEGGRS VHPQLPPEVP LDEVHSGSSH HGRFSGELEL ALQGNRPVPA 480 RRMDHGSSST FNQTGNTTDW SL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 5e-30 | 184 | 266 | 2 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004974838.1 | 1e-177 | squamosa promoter-binding-like protein 14 isoform X1 | ||||
Swissprot | Q7EXZ2 | 1e-141 | SPL14_ORYSJ; Squamosa promoter-binding-like protein 14 | ||||
TrEMBL | A0A1E5VH98 | 0.0 | A0A1E5VH98_9POAL; Squamosa promoter-binding-like protein 14 | ||||
STRING | Pavir.Fb01946.1.p | 1e-175 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2527 | 37 | 87 |