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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00466.1.g00270.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | C3H | ||||||||
Protein Properties | Length: 190aa MW: 21358.9 Da PI: 8.894 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 40.3 | 5.1e-13 | 100 | 124 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tG+Ck+G++CkF+H++ Zmw_sc00466.1.g00270.1.sm.mkhc 100 QPECQYYLKTGICKFGATCKFHHPR 124 799********************96 PP | |||||||
2 | zf-CCCH | 17 | 1e-05 | 146 | 164 | 3 | 21 |
S---SGGGGTS--TTTTT- CS zf-CCCH 3 telCrffartGtCkyGdrC 21 +++C ++ rtG+Ck+G +C Zmw_sc00466.1.g00270.1.sm.mkhc 146 EKECAYYIRTGHCKFGMTC 164 679*************999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.943 | 97 | 125 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.8E-6 | 97 | 124 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.1E-10 | 100 | 124 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.1E-7 | 100 | 126 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.4E-5 | 103 | 125 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 8.258 | 143 | 164 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 27 | 143 | 167 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MKVSATLLVL LLLPSCVPLW NSEVFARARC VAVGFGWDWD HVVAVCGKLC FASGDVWVAN 60 RLRSHGRAEL SNAELSAVSV AHTAVAVARM KGEYPQRVGQ PECQYYLKTG ICKFGATCKF 120 HHPREKAAMA NRVQWNSLGY PLRPNEKECA YYIRTGHCKF GMTCSDWFVI LRRPTADVWR 180 CPILYSLTTE |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Swissprot | Q2R4J4 | 2e-46 | C3H63_ORYSJ; Zinc finger CCCH domain-containing protein 63 | ||||
TrEMBL | A0A0E0F5M8 | 6e-45 | A0A0E0F5M8_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI11G10690.2 | 2e-45 | (Oryza meridionalis) | ||||
STRING | ORGLA11G0112800.1 | 2e-45 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP34972 | 2 | 4 |
Publications ? help Back to Top | |||
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