PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Zmw_sc00463.1.g00390.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 415aa MW: 43988.4 Da PI: 6.1842

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00463.1.g00390.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44	4.1e-14	81	132	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P+a + ++ + a+i+ A+e++k+L+ Zmw_sc00463.1.g00390.1.am.mk 81 QRMTHIAVERNRRRQMNEYLAVLRSLMPEA---YVQRGDQASIVGGAIEFVKELE 132 79**************************...*****************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.161	80	131	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.44E-17	81	156	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.62E-14	81	136	No hit	No description
Gene3D	G3DSA:4.10.280.10	6.9E-15	81	151	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.0E-11	81	132	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.3E-12	86	137	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 415 aa Download sequence Send to blast
MSALVDALCA LSSDAALIFD PLNAASAASF LFDNAAFCDA GIALGAAPVL QHAAGAPGAV 60 AAXXXXVGAQ KEAAAAGAEL QRMTHIAVER NRRRQMNEYL AVLRSLMPEA YVQRGDQASI 120 VGGAIEFVKE LEQQLQSLEA QKRTLAHHHQ HYKAKPDAAA STPTTCVVES ATTTTTTSNC 180 SSSVAEDAHS VDAPPFARFF MYPQYVWCHQ SPRELPAEDG GGRPGVADIE VSLVETHASV 240 RVMAPRRPAQ LLRMVAGLQA LRLPVLHLTV TTLDALALYS LSVKLDASPD LSMSLAAVSA 300 STARQSGHCA ERIVIEIGME KWDREKATPR PQAMYMLLCL LPSPCVILAT VSSGHRTCTQ 360 ARSGCQLFHL CLPQVEEGCG LPTADDIAAA VHHVLCIIDA DAVAQEMLAL GAVGH

Sequence ? help Back to Top

Protein Sequence Length: 415 aa Download sequence Send to blast

MSALVDALCA LSSDAALIFD PLNAASAASF LFDNAAFCDA GIALGAAPVL QHAAGAPGAV  60
AAXXXXVGAQ KEAAAAGAEL QRMTHIAVER NRRRQMNEYL AVLRSLMPEA YVQRGDQASI  120
VGGAIEFVKE LEQQLQSLEA QKRTLAHHHQ HYKAKPDAAA STPTTCVVES ATTTTTTSNC  180
SSSVAEDAHS VDAPPFARFF MYPQYVWCHQ SPRELPAEDG GGRPGVADIE VSLVETHASV  240
RVMAPRRPAQ LLRMVAGLQA LRLPVLHLTV TTLDALALYS LSVKLDASPD LSMSLAAVSA  300
STARQSGHCA ERIVIEIGME KWDREKATPR PQAMYMLLCL LPSPCVILAT VSSGHRTCTQ  360
ARSGCQLFHL CLPQVEEGCG LPTADDIAAA VHHVLCIIDA DAVAQEMLAL GAVGH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	81	92	RMTHIAVERNRR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020189025.1	1e-105	transcription factor bHLH94-like
TrEMBL	A0A453PAX1	1e-104	A0A453PAX1_AEGTS; Uncharacterized protein
STRING	Pavir.Ab02502.1.p	1e-103	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3712	36	78