PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00457.1.g00320.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | B3 | ||||||||
Protein Properties | Length: 716aa MW: 78295.4 Da PI: 8.6928 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 30.8 | 5.3e-10 | 271 | 330 | 1 | 58 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr 58 f+k l+ sd+++ grlvlpkk+ae++ ++++e+ l+++d +g++W ++++++ + ++ Zmw_sc00457.1.g00320.1.sm.mkhc 271 FEKMLSASDAGRIGRLVLPKKCAEAYfpPISQPEGLPLKVQDVTGKEWMFQFRFWPNNNS 330 89**************************555566778***************99766554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.4E-18 | 263 | 331 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.05E-13 | 268 | 330 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.03E-14 | 269 | 332 | No hit | No description |
SMART | SM01019 | 0.0036 | 271 | 348 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 716 aa Download sequence Send to blast |
MAPPSPVWSP SMHVPQNVAD RKENPVKSWR PPAGQISSQW RQTSMWSVSS VQSDLQQRLA 60 YEFDRPSGSE KLLPGRTFIH GSERKFDEMH ERPTTPASMN QLLRDRDANG HGQPTNLDPA 120 YYALYHREGP HPSSVNDPGH HGGENESFSA RRVGISDPST GLDAGFKLDS HHPSDQPSLS 180 VGLPSNFAST NGPKEHIRIA SSQPQASSSL QKQFYAHPVS GYNEFQAQMR NGRPRMDAKA 240 RSQLLPRYWP RITDQELQHL SGDSHSVTPL FEKMLSASDA GRIGRLVLPK KCAEAYFPPI 300 SQPEGLPLKV QDVTGKEWMF QFRFWPNNNS RIRLEPEGKL IMGFRKATNL STEQDQTSKP 360 TNGAPTSSEV NGKAPAPDSS PNAAATRQNK VKIESNSSSP VEQATASKID KGGPAQKEGQ 420 GTVQSSQVSV KRKATSVGQK IKRLRMDNEE SIELKITWEE AQELLRPPPK APSVVVVDGH 480 EFEEYEEPPI LGRKTHFATN QSGSSCEAAP EISMEDLAEL IPIKSGFGGA KKSKAKIEAD 540 TIDASDGLDT LANLAILGEG EALPSQPTTK HPRHRPGCSC IVCIQPPSGK GPKHKQTCTC 600 NVCMTVRRRF RTLMLRREKR KDTGSPRKKE ASQTSETVLQ TGSGPPAIST SADSSPQKAD 660 TNADGPEDMA VDPKMTSSPV KNHIDLNSQP DRDDEQSPKA DAGAAGATRL LRDNLT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9a_A | 2e-41 | 250 | 349 | 2 | 126 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 616 | 628 | REKRKDTGSPRKK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012699489.1 | 0.0 | B3 domain-containing protein Os07g0563300 isoform X2 | ||||
Swissprot | Q0D5G4 | 0.0 | Y7633_ORYSJ; B3 domain-containing protein Os07g0563300 | ||||
TrEMBL | K3ZQF2 | 0.0 | K3ZQF2_SETIT; Uncharacterized protein | ||||
STRING | Si028829m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7490 | 36 | 47 |