PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00451.1.g00140.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family M-type_MADS
Protein Properties Length: 749aa    MW: 82323.9 Da    PI: 9.1418
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00451.1.g00140.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF60.32.2e-19537585149
                                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                        SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 
                                   kri+ +  rqv fskRr+g++KKA+ELS+LC+a v  ++fs+ gk +++
  Zmw_sc00451.1.g00140.1.am.mk 537 KRINCTAARQVCFSKRRQGLFKKASELSILCGAMVGFVVFSPAGKPFTF 585
                                   68888999*************************************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046014.6E-57186333IPR007679Domain of unknown function DUF569
SuperFamilySSF504052.35E-20191337IPR008999Actin cross-linking
Gene3DG3DSA:2.80.10.502.1E-8193254No hitNo description
SMARTSM004329.3E-26529588IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.1529589IPR002100Transcription factor, MADS-box
PRINTSPR004047.0E-16531551IPR002100Transcription factor, MADS-box
CDDcd002654.01E-31532597No hitNo description
SuperFamilySSF554556.54E-24532604IPR002100Transcription factor, MADS-box
PfamPF003193.5E-23538585IPR002100Transcription factor, MADS-box
PRINTSPR004047.0E-16551566IPR002100Transcription factor, MADS-box
PRINTSPR004047.0E-16566587IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 749 aa     Download sequence    Send to blast
MSGVVNGLCV VAVRGSESES YMGTGCLVSF SVMGLNYWLR QCSCGSGGDL NCPTMAAHVP  60
PGQNFSLGFA RTVTNVSAPS AVYDEDIVGV SSTHAMEVTV TRGRPEFKEQ NRTASYTVSV  120
SGVAPAAGEV VSVVVVWSDD GNHVVRSPLV PHRARDARST SHHPRPRPRP RLPSATAPGL  180
ASPPPMELFE RAKTVRLRSH HDKFLYADED ESHVVQDRNA SSANARWLVE PVPHSPGVLR  240
LRSRYGRYLS ASNEPFLLGV TGRKVLQTLP HRLDSSVEWV PDRGDVGAEH AGRRAVRLRT  300
RYGNFLRANA GLPPWRNSVT HDVPHRHPGW VLWDVEIVQA LPPPGPDDSP DATAVPTPSY  360
KPTSILPPSP APLPTSALRP PPMPHHHIDN TPPFRAQPPP PPPGYIAPPA PGFARLESAE  420
SFSVPLHKVG GRLIHYHIGD DNGNVSEDED PRTFTFNGTS LEELMERLYE ETGLEDMIMC  480
SRSPINGKLL PLRLQLPPNN VAMHIVLVRK LSKGLAPLAS RIMNQLLLLS WQKIEIKRIN  540
CTAARQVCFS KRRQGLFKKA SELSILCGAM VGFVVFSPAG KPFTFGSPSI KAVIDKHFRT  600
LGNRSSPKVD HEIHNVSGVE TTVLLERKEL EKSLEAKKIR TKKIDEEIVE KDCGYLMHYT  660
SADISGLGPY ELQEIYNNLE AIKYVLMGMH SQMHQEKPAV KFMDGAQKSV DEGICSLHQR  720
GQSVLTTSGS RANNLRVDAD AARRIRPHP