PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00436.1.g00230.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family M-type_MADS
Protein Properties Length: 794aa    MW: 84642.7 Da    PI: 8.3744
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00436.1.g00230.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.61.4e-27437486150
                                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                        SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 
                                   krien++nrqvtfskRrng++KKA+ELSvLCd++va+++fs++g+l  +s
  Zmw_sc00436.1.g00230.1.am.mk 437 KRIENNTNRQVTFSKRRNGLIKKAYELSVLCDIDVALLMFSPSGRLSHFS 486
                                   79********************************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.7E-37429488IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.36E-26429489IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.324429489IPR002100Transcription factor, MADS-box
CDDcd002654.52E-32430486No hitNo description
PROSITE patternPS003500431485IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-24431451IPR002100Transcription factor, MADS-box
PfamPF003192.4E-25438485IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-24451466IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-24466487IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 794 aa     Download sequence    Send to blast
MHSIPPAGFR GRFFRSSPSR RAAGSFAFSG KPEESSAQRG RPENEIHLPD SHASPEGDEG  60
DCGGGGDAMG SICSRDNSPG RERPHYNHVK NRGNNAARRG GIDRYARIGD EYETLEEVTD  120
ALAHAGLESS NLIVGIDFTK SNEWTACMPG CLRCLPSCSP RLPGAIDRQR SSSWLVTGLW  180
ACSGGCSIGS GKRPDARQPA VGSRRFLHWF AGSGVVGFGN MRVAALQAID HGLPGHDVVV  240
VAKAPLCGSG VVGFGNMRVA ALQAIDHGLP GHDVVVVAKA PLCAFLSPEL LKRRAVGDHR  300
RGNGEKERGG QPKSTKQPWP AARALCPERL VQKSSGGPRR GAVGVLVASP GRKRVHDVVS  360
IFSPPFPPLG PLRPVRSGSR TWWPRSFPSD PGRASASPSD APSLSPPCQV VHRRVGRRTC  420
SRSSPIDAMG RVKLPIKRIE NNTNRQVTFS KRRNGLIKKA YELSVLCDID VALLMFSPSG  480
RLSHFSGRHG YPNESLADVF RPRISRRARV SDRFSALLAA VLACVAGWRT CMLQRLKREG  540
DVATQLAKSV YELFKPADLA TLGSTSEIDG CEKFLTEVLA RVVERKNYLL SSHMAPFDAT  600
ATGVKDAAQM FVKPAEQVEG MAAFAGDVAL WAADEGSSPG HQMFGSSDPR IYLRDQDMYG  660
APSQVAGLLG EPGAGGEADA DAWREEYTCT ELLSTLIPAT PFPLMQVSID PPFGSVAGGG  720
GTTEHCLGLG PDDQFLPMDE AMPMAVATQE QVEASASCSY VPRDETGGTP PVMAYDSTVA  780
PEGNVAGGSG TDLP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P3e-15429486158Myocyte-specific enhancer factor 2B
1tqe_Q3e-15429486158Myocyte-specific enhancer factor 2B
1tqe_R3e-15429486158Myocyte-specific enhancer factor 2B
1tqe_S3e-15429486158Myocyte-specific enhancer factor 2B
6c9l_A3e-15429486158Myocyte-specific enhancer factor 2B
6c9l_B3e-15429486158Myocyte-specific enhancer factor 2B
6c9l_C3e-15429486158Myocyte-specific enhancer factor 2B
6c9l_D3e-15429486158Myocyte-specific enhancer factor 2B
6c9l_E3e-15429486158Myocyte-specific enhancer factor 2B
6c9l_F3e-15429486158Myocyte-specific enhancer factor 2B
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49533360