PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00423.1.g00230.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 636aa MW: 67063.2 Da PI: 10.3853

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00423.1.g00230.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.3	2.8e-05	161	183	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Zmw_sc00423.1.g00230.1.am.mk 161 FVCEICSKGFQRDQNLQLHRRGH 183 89*******************88 PP
2	zf-C2H2	13.4	0.00023	237	259	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H + + Zmw_sc00423.1.g00230.1.am.mk 237 WKCDKCDKKYAVQSDWKAHVKIC 259 58*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	7.9E-5	160	183	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.69E-7	160	183	No hit	No description
PROSITE profile	PS50157	10.887	161	183	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.036	161	183	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	163	183	IPR007087	Zinc finger, C2H2
SMART	SM00355	220	202	232	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	1.0E-4	225	258	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.69E-7	232	257	No hit	No description
SMART	SM00355	71	237	257	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 636 aa Download sequence Send to blast
MQPVLLHFDP SLLLFSHGDR LETITIAFRL NQWRARGPVR VPKPDANPRH LLPPRGRHVA 60 PCCLSPQAAR QRGSGGRPVA RLGTRVVRFG RRPTAIRKET TGEMEVEATT TTTAASSSGR 120 APQLQPPGPP AKKKRALPGM PDPDAEVIAL SPKTLLATNR FVCEICSKGF QRDQNLQLHR 180 RGHNLPWKLR QRSGKEPRKR VYVCPEPSCV HHDPTRALGD LTGIKKHFCR KHGEKKWKCD 240 KCDKKYAVQS DWKAHVKICG SREYRCDCGT LFSRRDSFIT HRAFCDALAE DNANARAGAA 300 EEENGSSAAV GPPPAPPATQ APPPAAPTPL KQQPHPPFPA AAPAPHHAEQ RNERETNASE 360 PVQFTPPPQQ APLPVSSQAP ASAANVSISS STSSVVASSQ SQIGGGLFAP SSMAPAPQFT 420 NLGPERALPV KPPPLCLSTD ASSSIFAAPV ASDRQLRIAP PPPPSPSPHM SATALLQKAA 480 QMGATSSSSS FLRGLGLDVS TSSPGPSSSG QPRHAETPLQ QWPPRLGTEA AAPMLSAGLG 540 LGLPYDSTGA TVCLPERMMG QSALFAAKPA TLDFLGLGMS PTAGASASRG LSAVIQPIGG 600 AVGIGGSSAG AAEAFGAEHG AQAKPWERNP SSSQIL

Sequence ? help Back to Top

Protein Sequence Length: 636 aa Download sequence Send to blast

MQPVLLHFDP SLLLFSHGDR LETITIAFRL NQWRARGPVR VPKPDANPRH LLPPRGRHVA  60
PCCLSPQAAR QRGSGGRPVA RLGTRVVRFG RRPTAIRKET TGEMEVEATT TTTAASSSGR  120
APQLQPPGPP AKKKRALPGM PDPDAEVIAL SPKTLLATNR FVCEICSKGF QRDQNLQLHR  180
RGHNLPWKLR QRSGKEPRKR VYVCPEPSCV HHDPTRALGD LTGIKKHFCR KHGEKKWKCD  240
KCDKKYAVQS DWKAHVKICG SREYRCDCGT LFSRRDSFIT HRAFCDALAE DNANARAGAA  300
EEENGSSAAV GPPPAPPATQ APPPAAPTPL KQQPHPPFPA AAPAPHHAEQ RNERETNASE  360
PVQFTPPPQQ APLPVSSQAP ASAANVSISS STSSVVASSQ SQIGGGLFAP SSMAPAPQFT  420
NLGPERALPV KPPPLCLSTD ASSSIFAAPV ASDRQLRIAP PPPPSPSPHM SATALLQKAA  480
QMGATSSSSS FLRGLGLDVS TSSPGPSSSG QPRHAETPLQ QWPPRLGTEA AAPMLSAGLG  540
LGLPYDSTGA TVCLPERMMG QSALFAAKPA TLDFLGLGMS PTAGASASRG LSAVIQPIGG  600
AVGIGGSSAG AAEAFGAEHG AQAKPWERNP SSSQIL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	6e-33	233	293	3	63	Zinc finger protein JACKDAW
5b3h_F	6e-33	233	293	3	63	Zinc finger protein JACKDAW
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269\|PubMed:21571950, ECO:0000269\|PubMed:25035403}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004985335.1	0.0	protein indeterminate-domain 1
Swissprot	Q9LVQ7	1e-137	IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBL	K4A877	0.0	K4A877_SETIT; Uncharacterized protein
STRING	Si035083m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP202	38	320

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]