PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00403.1.g00170.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 381aa    MW: 41268.9 Da    PI: 9.4238
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00403.1.g00170.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.42e-30308365359
                                   -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                   D y+WrKYGqK++kgs++pr+YYrC+s+ +C+++k+ver+++dp+++++tYe++Hnh 
  Zmw_sc00403.1.g00170.1.sm.mk 308 DSYSWRKYGQKPIKGSPHPRGYYRCSSKkDCMARKHVERCRSDPTMLIVTYENDHNHA 365
                                   99*************************99****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.0E-13272304IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.805.1E-33294367IPR003657WRKY domain
PROSITE profilePS5081130.986301367IPR003657WRKY domain
SuperFamilySSF1182909.55E-27302367IPR003657WRKY domain
SMARTSM007742.1E-36306366IPR003657WRKY domain
PfamPF031065.4E-26308364IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MEEVEQANRA AVESCKKVVA VLSRSGNPFQ PVPVAAETDE AVARFGKVTA VLSDRLGHAR  60
ARIGKRIASP VDASYLMDHQ PIATCQTPNS ALLVGTQALP PPPPLPTIRS VSVMSRQETE  120
AAPAPCANVT LTPARFDRNM FLETPLLYLN SCSVPSPNAT AVQKSSSKAV ATPVANPCTT  180
TTHIQFQPQP QQQPKAQKSF LFDQTPSTEQ FHIEVPRGGA KEVISFSFDN NSVCTSSAAT  240
SFFTSISNQL ISMSDAATSS AATGKKAYGK RGEDHGVKCH CPKKKKPRDK RVVRVPAISD  300
KNADIPPDSY SWRKYGQKPI KGSPHPRGYY RCSSKKDCMA RKHVERCRSD PTMLIVTYEN  360
DHNHAPPLDP SVLAANAETC S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-183043671577Probable WRKY transcription factor 4
2lex_A3e-183043671577Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022678752.11e-158protein WRKY1
TrEMBLK4AMM71e-157K4AMM7_SETIT; Uncharacterized protein
STRINGSi040171m1e-158(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127053036