PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00399.1.g00340.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | GRAS | ||||||||
Protein Properties | Length: 626aa MW: 65977.8 Da PI: 8.0302 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 291.4 | 2.4e-89 | 259 | 626 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalk 82 ++lL e+A a+++g+ e a + La l+ a+p+gd qRl+a+++ AL++r+a +++ p+++ +e e+ + + Zmw_sc00399.1.g00340.1.sm.mk 259 RQLLSEAAVAIADGNIETAATHLAVLKRAANPRGDVEQRLIAMMVAALSSRIAP-----AASSPAEHLAELCGPEQRTWSQ 334 789***************************************************.....3334444444444777888889 PP GRAS 83 lfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg....skeele 159 l+++ sP+++++ +aN aI+eav ++++H +Dfd+s + Q +aL q La+R+ + sl++T++ +p+s ++ +l Zmw_sc00399.1.g00340.1.sm.mk 335 LLHDRSPCFRLALHAANVAIVEAVGDHRAIHLVDFDVSAP-QHAALVQYLADRRVPGTSLKVTAITDPSSPfaqsQTATLP 414 *************************************987.99************************998889999999** PP GRAS 160 etgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvv 240 ++gerL+k+A++ g++ +f++ v+ r ++l+ ++L ++pg alaVnl+++l +++desvs +++rde+L+ v+ l P+vv Zmw_sc00399.1.g00340.1.sm.mk 415 AVGERLKKLADRAGIEYRFKM-VSCRAAELDASKLGCEPGGALAVNLAFALSHVPDESVSPANTRDELLRRVRALGPQVVA 494 ********************9.7999******************************************************* PP GRAS 241 vveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerlee 321 ++eqe+++n++++++rf++a+ +y a++dslea+l+r++ er++ E + l+++++n+v eg++r er+e ++kWr+r+++ Zmw_sc00399.1.g00340.1.sm.mk 495 LIEQELNTNTAPLAARFTDACAHYGAILDSLEATLGRDNAERTMPESA-LAKKASNAVGREGSDRLERCEVFGKWRARFGM 574 *********************************************999.9******************************* PP GRAS 322 aGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 aGF+pv+l+ ++a+q+ + ++ +++ e+g l +gW++r ++++SaWr Zmw_sc00399.1.g00340.1.sm.mk 575 AGFRPVALNPSIADQVVARCGPTP-PALSMKTENGVLRIGWMGRVVTVASAWR 626 ******************999999.559************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 44.069 | 232 | 607 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 8.4E-87 | 259 | 626 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 626 aa Download sequence Send to blast |
MEPGAPWRDP RQGYVYGFGS AMQIPLQQQQ RPDAVAAGGV LKRSLGELER WQHQQNQQVA 60 AQQALYLRAV RQRTAAATDI AALLGGTPSH RPMVLSGSSY GGALASPSST LSSLTTASGA 120 AVPLMQPQMQ RQVQPLMASS QQKPQAALGV SRAALPPPAV SSDMFLLQEL EKQLLGDDDE 180 PVAAMSGTGS AVTNSEWEET MQQLNSITAA PSPVVPAAAT PNNNNNPGMT RSPSNSSSST 240 ASSSASCSPP TPGAAAATRQ LLSEAAVAIA DGNIETAATH LAVLKRAANP RGDVEQRLIA 300 MMVAALSSRI APAASSPAEH LAELCGPEQR TWSQLLHDRS PCFRLALHAA NVAIVEAVGD 360 HRAIHLVDFD VSAPQHAALV QYLADRRVPG TSLKVTAITD PSSPFAQSQT ATLPAVGERL 420 KKLADRAGIE YRFKMVSCRA AELDASKLGC EPGGALAVNL AFALSHVPDE SVSPANTRDE 480 LLRRVRALGP QVVALIEQEL NTNTAPLAAR FTDACAHYGA ILDSLEATLG RDNAERTMPE 540 SALAKKASNA VGREGSDRLE RCEVFGKWRA RFGMAGFRPV ALNPSIADQV VARCGPTPPA 600 LSMKTENGVL RIGWMGRVVT VASAWR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 2e-36 | 277 | 626 | 22 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020401436.1 | 0.0 | scarecrow-like protein 8 | ||||
TrEMBL | A0A3L6Q6Y6 | 0.0 | A0A3L6Q6Y6_PANMI; Scarecrow-like protein 8 | ||||
STRING | GRMZM2G173429_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4188 | 34 | 74 |