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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00399.1.g00090.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB_related | ||||||||
Protein Properties | Length: 448aa MW: 49957.3 Da PI: 9.0332 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.2 | 5e-15 | 92 | 136 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT++E++l+++ +++G g W++I +++g +t+ q++s+ qk+ Zmw_sc00399.1.g00090.1.sm.mkhc 92 REKWTEDEHKLFLESLELHGRG-WRRIQEHIG-SKTAVQIRSHAQKF 136 789*******************.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.04E-15 | 86 | 142 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.509 | 87 | 141 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.8E-8 | 89 | 138 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.2E-14 | 90 | 139 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 1.5E-11 | 91 | 139 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.5E-13 | 92 | 135 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.27E-10 | 94 | 137 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 448 aa Download sequence Send to blast |
MARFQEFEVN CDVGREYHQK NPLNSTAMDL PAEERMPKVR CTVHLSRKAS TTPPRIVILS 60 SSNELRISPN IKFTILAHYV QARKPYTISK QREKWTEDEH KLFLESLELH GRGWRRIQEH 120 IGSKTAVQIR SHAQKFFSKV TREASGDGNG TAAAPQIRIP PPRPKRKPTH PYPRKLGNSP 180 GKDTPSLKQL DKPRLQVVPS LYEQENGSPK SVLTTAQVVR SPASSVDSED RYPAPRIAAV 240 EVATQLPPYK VANDDTASKH ATCAIPESHV LRLFGKRVVV NGLHQQPNSD TRNQQNVADM 300 ELDASAEAPT SETEKTFSCG AAEANTLNPC LTDAHQFMYY FPRGKAEQPH YQPSQAADCR 360 FTSGEGSCTA SVTTSGGVPE TPTWNSDSVE SMQVINNEDE VIPVPGSRKC ANRTPDHLQG 420 FVPYKKWKMV QSKTPEVEAN REMTRLCL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025824173.1 | 1e-143 | uncharacterized protein LOC112899782 | ||||
TrEMBL | A0A2S3I9P7 | 1e-142 | A0A2S3I9P7_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Gb00859.1.p | 1e-142 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2722 | 36 | 86 |