PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00394.1.g00270.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HSF
Protein Properties Length: 421aa    MW: 47961.1 Da    PI: 5.6102
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00394.1.g00270.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind107.69.4e-341061962101
                                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEE CS
                    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiwe 80 
                                     Fl+k+++++ed++++ ++sws+ gnsfvv+d++ f++ +Lp+ Fkhsnf+SFvRQLn+YgF+kv+ ++         we
  Zmw_sc00394.1.g00270.1.am.mkhc 106 FLSKTFDLVEDRSTDAVVSWSRAGNSFVVWDPHVFTEALLPRLFKHSNFSSFVRQLNTYGFRKVDPDR---------WE 175
                                     9****************************************************************999.........** PP

                                     EEESXXXXXXXXXXXXXXXXX CS
                    HSF_DNA-bind  81 FkhksFkkgkkellekikrkk 101
                                     F+++ F +g+++ll++ikr+k
  Zmw_sc00394.1.g00270.1.am.mkhc 176 FANEGFLRGQRHLLKTIKRRK 196
                                     *******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467856.39E-34102195IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.1E-37102195IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.1E-58102195IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.8E-31106195IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.5E-18106129IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.5E-18144156IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340145169IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.5E-18157169IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
NLPRRRDRDA CLESSTAFAT SPDALVRRGI YERGSRPAPL LPQPRFTDRF FTAAQMSRTV  60
WVLGCRAMDP AAPGIVKEEL LEREDVGGRD APRPMEGLHE VGPPPFLSKT FDLVEDRSTD  120
AVVSWSRAGN SFVVWDPHVF TEALLPRLFK HSNFSSFVRQ LNTYGFRKVD PDRWEFANEG  180
FLRGQRHLLK TIKRRKPLAT APASQQRTPV PALCLEVGEF GFEKEIDRLK RDKNILITEV  240
VELRQEQQTT REHVHAMEKR LRTAEQKQVQ MMGFLARAMR NPEFLQQLVQ QQDKRKELED  300
ACSKKRRRPI DNAPFYSPGE TSQSEQLDSP FLFDSGVLDG LTEPGMPELE NLAVNIQELG  360
KGSPDDGRMD QASGQPELND DFWEELLIDD YGDKAGQPEL QARTEVADEI AQQLGYLRSK  420
V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-248719510129Heat shock factor protein 1
5d5v_B5e-248719510129Heat shock factor protein 1
5d5v_D5e-248719510129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1188194LKTIKRR
2293307KRKELEDACSKKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000269|PubMed:16202242}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:16202242}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022679240.10.0heat stress transcription factor A-2c isoform X2
SwissprotQ338B00.0HFA2C_ORYSJ; Heat stress transcription factor A-2c
TrEMBLK4ABP70.0K4ABP7_SETIT; Uncharacterized protein
STRINGSi036304m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Singh A, et al.
    OsHsfA2c and OsHsfB4b are involved in the transcriptional regulation of cytoplasmic OsClpB (Hsp100) gene in rice (Oryza sativa L.).
    Cell Stress Chaperones, 2012. 17(2): p. 243-54
    [PMID:22147560]