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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00382.1.g00370.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | C2H2 | ||||||||
Protein Properties | Length: 215aa MW: 24795.7 Da PI: 10.2698 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 18.9 | 4e-06 | 21 | 43 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k F r nL+ H r H Zmw_sc00382.1.g00370.1.am.mk 21 FVCEVCNKGFQREQNLQLHRRGH 43 89*******************88 PP | |||||||
2 | zf-C2H2 | 13.3 | 0.00025 | 98 | 120 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H + + Zmw_sc00382.1.g00370.1.am.mk 98 WKCDKCSKRYAVQSDWKAHSKIC 120 58*****************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 2.3E-6 | 20 | 43 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 4.67E-8 | 20 | 43 | No hit | No description |
SMART | SM00355 | 0.0041 | 21 | 43 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF12171 | 1.1E-5 | 21 | 43 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE profile | PS50157 | 11.094 | 21 | 43 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 23 | 43 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.1E-4 | 86 | 119 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 4.67E-8 | 93 | 118 | No hit | No description |
SMART | SM00355 | 140 | 98 | 118 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MDPDAEVIAL SPKTLLATNR FVCEVCNKGF QREQNLQLHR RGHNLPWKLK QKNPLQAQRR 60 RVYLCPEPTC VHHDPSRALG DLTGIKKHFC RKHGEKKWKC DKCSKRYAVQ SDWKAHSKIC 120 GTREYRCDCG TVFSRYATSP GDPFYVFLLP SFSAWYRHGV LHHVSLGFGL GFCLGLRRHG 180 CGWLWSSPDV TRKKKTHPNT GVRKKHAVLE NCSHM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 2e-20 | 94 | 135 | 3 | 44 | Zinc finger protein JACKDAW |
5b3h_F | 2e-20 | 94 | 135 | 3 | 44 | Zinc finger protein JACKDAW |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 192 | 196 | KKKTH |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000305}. | |||||
UniProt | Transcription factor that may act a transcriptional activator of nuclear-encoded photosynthetic gene expression (Probable). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:24821766, ECO:0000305|PubMed:19726569}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by gibberellin. {ECO:0000305|PubMed:17933900}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015626115.1 | 9e-96 | protein indeterminate-domain 4, chloroplastic | ||||
Refseq | XP_015626116.1 | 9e-96 | protein indeterminate-domain 4, chloroplastic | ||||
Refseq | XP_015626117.1 | 9e-96 | protein indeterminate-domain 4, chloroplastic | ||||
Refseq | XP_015626118.1 | 9e-96 | protein indeterminate-domain 4, chloroplastic | ||||
Swissprot | O22759 | 3e-84 | IDD12_ARATH; Protein indeterminate-domain 12 | ||||
Swissprot | Q8GYC1 | 3e-83 | IDD4_ARATH; Protein indeterminate-domain 4, chloroplastic | ||||
TrEMBL | A0A0D3F8R4 | 2e-95 | A0A0D3F8R4_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0D9VJC5 | 2e-94 | A0A0D9VJC5_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0D9YWA5 | 2e-94 | A0A0D9YWA5_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0GB50 | 2e-94 | A0A0E0GB50_ORYNI; Uncharacterized protein | ||||
TrEMBL | A0A0E0K3G3 | 2e-94 | A0A0E0K3G3_ORYPU; Uncharacterized protein | ||||
TrEMBL | A0A0E0NJ25 | 2e-94 | A0A0E0NJ25_ORYRU; Uncharacterized protein | ||||
TrEMBL | B8AGE9 | 2e-94 | B8AGE9_ORYSI; Uncharacterized protein | ||||
TrEMBL | Q6EU15 | 2e-94 | Q6EU15_ORYSJ; Finger protein pcp1-like | ||||
STRING | OGLUM02G28000.1 | 3e-95 | (Oryza glumipatula) | ||||
STRING | ORUFI02G28900.1 | 4e-95 | (Oryza rufipogon) | ||||
STRING | OS02T0672100-01 | 3e-95 | (Oryza sativa) | ||||
STRING | ONIVA02G30280.1 | 3e-95 | (Oryza nivara) | ||||
STRING | OPUNC02G25110.1 | 3e-95 | (Oryza punctata) | ||||
STRING | OBART02G27440.1 | 4e-96 | (Oryza barthii) | ||||
STRING | LPERR02G22320.1 | 3e-95 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP202 | 38 | 320 |
Publications ? help Back to Top | |||
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