PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zmw_sc00376.1.g00220.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 323aa MW: 34225.5 Da PI: 5.9995 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.7 | 1.2e-17 | 182 | 230 | 5 | 56 |
AP2 5 GVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 GVr ++ +g+++AeIrd + ng r+++g+f+t+e Aa a+++a+ +++g+ Zmw_sc00376.1.g00220.1.sm.mk 182 GVRKRP-WGKYAAEIRDSTRNG--ERVWIGTFDTPEAAALAYDQAAYSMRGH 230 9*****.**********44465..**************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 20.89 | 179 | 237 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.3E-7 | 180 | 191 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-21 | 181 | 239 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.48E-13 | 182 | 238 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 4.2E-27 | 182 | 238 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.4E-12 | 182 | 230 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-29 | 182 | 243 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.3E-7 | 203 | 219 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 323 aa Download sequence Send to blast |
MEPHFGNGLY NGNAAHAREG QPLEQGYSHY SFTSYDGTFY SDGVFQPSSV CASPPPYGGS 60 GYTVAWASSS SSSSSTSHRH SYPQHLHFGG GIDEYYGCQV ETAMGAVDMD HVSALMGAAS 120 ISTATTSTSG SSATRTYAPA SCCTTEHHGE AFVAARSPSS AILHSNAIDG SSGGGDDAPL 180 IGVRKRPWGK YAAEIRDSTR NGERVWIGTF DTPEAAALAY DQAAYSMRGH GAVLNFPVEH 240 VQETLRDLGL SGGAAAEDSP VLALKRRHCI RKRLPKTKKA AGEQQTTVTS RGDGKEKQAA 300 SCVLELEDLG PEYLEELLAQ SFE |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-26 | 170 | 240 | 5 | 75 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 264 | 278 | KRRHCIRKRLPKTKK |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004959050.1 | 2e-83 | ethylene-responsive transcription factor 1 | ||||
TrEMBL | C5XCK5 | 7e-87 | C5XCK5_SORBI; Uncharacterized protein | ||||
STRING | Sb02g005840.1 | 1e-87 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP277 | 37 | 249 |