PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00369.1.g00040.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 725aa MW: 77806.2 Da PI: 10.2383

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00369.1.g00040.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.1	7.6e-06	222	244	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ Cgk F r nL+ H r H Zmw_sc00369.1.g00040.1.am.mk 222 YVCEVCGKGFQRDQNLQLHRRGH 244 9*******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.19E-8	221	244	No hit	No description
PROSITE profile	PS50157	11.822	222	244	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0081	222	244	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	7.3E-6	222	244	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	224	244	IPR007087	Zinc finger, C2H2
SMART	SM00355	34	264	294	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	3.19E-8	294	319	No hit	No description
SMART	SM00355	250	299	319	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 725 aa Download sequence Send to blast
MEEIPNPRAE GKRLLTESAA AASEGGGEWN QRKRHKAPRA VWPSCCCLPE TGGSIIYASC 60 CLLPFFLPST HARLDQLNLT ERPRHARREE VSTPVPTAVA AAGSSRTSTS RSGPAPACAR 120 ADPFVNYSSK RGWVLLASEE GEEEDREEEM MLKDLAAIQQ QQQLAADENM SNLTSASGDQ 180 ASVSSHPLPP PAKKKRSLPG NPDPDAEVIA LSPRTLMATN RYVCEVCGKG FQRDQNLQLH 240 RRGHNLPWKL KQRNPKEAAR KKVYVCPEPG CVHNDPARAL GDLTGIKKHF SRKHGEKKWK 300 CDRCSKRYAV HSDWKAHSKV CGTRERDSFI THRAFCDALA EESARAVTAA AAVAGQQHPG 360 MLFPHAGAGG GPGLQLPSVL DPSQPLGGHG LSLQEMCLKR EQQPFSWLAA QQQQQQQQMD 420 MPGAGLSSTV FGSARPLDQD YVGSSTPDSN SQPAGLTFGF SPSSATGTAS AAHMSATALL 480 QKAAQMGATL SRPSNQGQMA STHSRSATTN AATATAPASA AATSNPAKRG FARRSITDDD 540 SFYSVCCICM HGEATARHDL ASRLSAGRVP GRPAGRGSKQ ADARQATGAS LPFHIKYSAH 600 QSPGACRQGL RDRRGFTCGG GGGRHGRADG GAGAVGVVRT EGGREGGRQP LWSRVVNGAR 660 PRAWWWCSGR SRSGLRRTTA RRATARRRAH VRTSAYRHEV AYVAFGAGAN ERDQQKVMLS 720 FPSET

Sequence ? help Back to Top

Protein Sequence Length: 725 aa Download sequence Send to blast

MEEIPNPRAE GKRLLTESAA AASEGGGEWN QRKRHKAPRA VWPSCCCLPE TGGSIIYASC  60
CLLPFFLPST HARLDQLNLT ERPRHARREE VSTPVPTAVA AAGSSRTSTS RSGPAPACAR  120
ADPFVNYSSK RGWVLLASEE GEEEDREEEM MLKDLAAIQQ QQQLAADENM SNLTSASGDQ  180
ASVSSHPLPP PAKKKRSLPG NPDPDAEVIA LSPRTLMATN RYVCEVCGKG FQRDQNLQLH  240
RRGHNLPWKL KQRNPKEAAR KKVYVCPEPG CVHNDPARAL GDLTGIKKHF SRKHGEKKWK  300
CDRCSKRYAV HSDWKAHSKV CGTRERDSFI THRAFCDALA EESARAVTAA AAVAGQQHPG  360
MLFPHAGAGG GPGLQLPSVL DPSQPLGGHG LSLQEMCLKR EQQPFSWLAA QQQQQQQQMD  420
MPGAGLSSTV FGSARPLDQD YVGSSTPDSN SQPAGLTFGF SPSSATGTAS AAHMSATALL  480
QKAAQMGATL SRPSNQGQMA STHSRSATTN AATATAPASA AATSNPAKRG FARRSITDDD  540
SFYSVCCICM HGEATARHDL ASRLSAGRVP GRPAGRGSKQ ADARQATGAS LPFHIKYSAH  600
QSPGACRQGL RDRRGFTCGG GGGRHGRADG GAGAVGVVRT EGGREGGRQP LWSRVVNGAR  660
PRAWWWCSGR SRSGLRRTTA RRATARRRAH VRTSAYRHEV AYVAFGAGAN ERDQQKVMLS  720
FPSET

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	5e-21	295	345	3	64	Zinc finger protein JACKDAW
5b3h_F	5e-21	295	345	3	64	Zinc finger protein JACKDAW
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	248	261	KLKQRNPKEAARKK

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP202	38	320