PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00364.1.g00360.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 438aa MW: 48368.6 Da PI: 9.5294

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00364.1.g00360.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	23	1.4e-07	202	246	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h +rEr+RR+++ ++++ L l+ + K +K +i++ A YI++L Zmw_sc00364.1.g00360.1.am.mk 202 HMMRERQRREKLSQSYADLYALVAAR-----SKGDKNSIVQSAAIYIHEL 246 889********************7.....6999999*******998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.604	197	246	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.16E-11	197	267	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.4E-9	201	264	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.61E-7	201	247	No hit	No description
Pfam	PF00010	2.6E-5	202	246	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.2E-5	203	252	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 438 aa Download sequence Send to blast
MARPCVLYGC SRNRRDGDVG DAAASTGNTH AEEHGIIRNH AVRDYPPTPH RCLFKPAFER 60 LRGDKPLVTP RPPLHGCLLA ERRRSPGEMQ VGMDSYYAGF GFNDEIPCFY PHGAAPASPE 120 LPFGFDAVSP FVEPPGAPVL QAGSEVRGYG GAAGPEVITG GAPQMEMMDA MGAMRADRDQ 180 CQTRGEGQRQ PGTVESSRGF RHMMRERQRR EKLSQSYADL YALVAARSKG DKNSIVQSAA 240 IYIHELKGAR GQLHRRNEEL KARILGHDAR QPSVKVDFEV DDPASGIDSM IGALRRLKSM 300 GVKARGIRSN MTGGRLWTEM NIETTIAASD VEKAVEEALT QEVERKQQQQ MADEPAPARV 360 QNVYARGWAC PAESSGQRNR SVDPRIRRFA SWKFHLPILI RWRKSHGSAP TAQSRCCRDR 420 RDDANPGSAR LGSLDSTR

Sequence ? help Back to Top

Protein Sequence Length: 438 aa Download sequence Send to blast

MARPCVLYGC SRNRRDGDVG DAAASTGNTH AEEHGIIRNH AVRDYPPTPH RCLFKPAFER  60
LRGDKPLVTP RPPLHGCLLA ERRRSPGEMQ VGMDSYYAGF GFNDEIPCFY PHGAAPASPE  120
LPFGFDAVSP FVEPPGAPVL QAGSEVRGYG GAAGPEVITG GAPQMEMMDA MGAMRADRDQ  180
CQTRGEGQRQ PGTVESSRGF RHMMRERQRR EKLSQSYADL YALVAARSKG DKNSIVQSAA  240
IYIHELKGAR GQLHRRNEEL KARILGHDAR QPSVKVDFEV DDPASGIDSM IGALRRLKSM  300
GVKARGIRSN MTGGRLWTEM NIETTIAASD VEKAVEEALT QEVERKQQQQ MADEPAPARV  360
QNVYARGWAC PAESSGQRNR SVDPRIRRFA SWKFHLPILI RWRKSHGSAP TAQSRCCRDR  420
RDDANPGSAR LGSLDSTR

Functional Description ? help Back to Top
Source	Description
UniProt	May act on an initial response of jasmonate-regulated gene expression toward drought tolerance as part of a BHLH148-TIFY11D/JAZ12-COI1A complex. {ECO:0000269\|PubMed:21332845}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA), methyl jasmonate (MeJA), drought, cold, salt and wounding. {ECO:0000269\|PubMed:21332845}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025794972.1	1e-103	transcription factor BHLH148-like
Swissprot	Q75KV9	2e-87	BH148_ORYSJ; Transcription factor BHLH148
TrEMBL	A0A2S3II72	1e-102	A0A2S3II72_9POAL; Uncharacterized protein
STRING	Si036716m	1e-101	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5940	34	50

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Yilmaz A, et al. GRASSIUS: a platform for comparative regulatory genomics across the grasses. Plant Physiol., 2009. 149(1): p. 171-80 [PMID:18987217]